Corynebacterium fournieri: CFOUR_06660
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Entry
CFOUR_06660 CDS
T09290
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfou
Corynebacterium fournieri
Brite
KEGG Orthology (KO) [BR:
cfou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfou03019
]
CFOUR_06660 (hrpB2)
Enzymes [BR:
cfou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFOUR_06660 (hrpB2)
Messenger RNA biogenesis [BR:
cfou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFOUR_06660 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
ABC_tran
HA2_N
ResIII
SLFN-g3_helicase
AAA_16
NACHT
Motif
Other DBs
NCBI-ProteinID:
WJY97739
LinkDB
All DBs
Position
1370400..1374365
Genome browser
AA seq
1321 aa
AA seq
DB search
MNEHASPTTPPTKPQLYEALDGVPIADVRRFRRRLKNAKSPEALAAIAGDVAAARAAVDE
RNAHIPEITYPEQLPVSARRDDIMELVRDNQVVVIAGETGSGKTTQIPKMLLELGRGRRG
LIGHTQPRRLAARTVAERIADELGQDIGESVGYAIRFDDRVSESTAVKLMTDGILLAEMQ
RDRFLNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIVTSATIDPEAFASHFAD
ADGNPAPIIEVSGRTYPVEIRYRPLVEQVQAKDGSVKEIDTDMIDGVVDACKELMREGEG
DILCFFASERDIRDCMEAIEKQHWRGVEVVPLFGRLSNAEQHRVFSPHSGRRIVLSTNIA
ETSLTVPGIHYVVDTGLARISRYSTRTKVQRLPIEEISQASANQRSGRSGRTADGVAIRL
YSEDNFEARQEFTDPEILRTNLASVVLQMISLRLGDITEFPFIQPPDHKAVRDGLLLLHE
LGAISDKERGGVPVLTAVGRDIARIPVDPKMARMLVEANRLGVLDDVTVIVASMTIQDVR
ERPLEHQAQADQAHARFKDATSDFLASLKLWDYIGDSRHELSGNAFRKRMKREFLHYMRI
REWFDLVRQLRDVERQLGWSRAENVAGDRDADAIHKSLLTGLLSNIGARDGNSKEFQGAR
GTRFLVFPGSSLSKKPPEFIMAAELVETSRLWARDVAKIEPAWVEAAAGDLLKHSYSEPI
WSRKRSAAMVHQKSMLYGVTIVRDRLVPYHRVDPAGARNMFIRHALLEGDWNRHHHFIDH
NEALLAEAAEVEEKVRRRGLVVDEDTLFEFYDARLPEDVTTARHFDSWWKKKRAKDKHYL
DFDPATLLDDEGVDSSTNAFPEVWQQGTIDYALRYKFEPGDPFDGVTVDVPVPLLANLSP
HGFDWLVPGLRSELAAEYIRTLPKALRKTVVPAPDFAERALELIQNRKAADGASEQQLRQ
EPFGDVLADALRSIGGRGINGSDFNPAALPAHLKVTFAAIDRRGKVVDHDKDLDALKRRQ
AGKIKSSVSKAGRTSESEAVAKWTADSLGAVPETVTTTIDGNDVDAFPALEATKDGVKVT
VHPTKAAADASMITATLTLLLREITVNPTQMTKGLPLRQKVAVDRYPHGGAEGLVEDARV
AVIRDVMLSSGGPVRSPEEFEALVAEIRPQVAGAVRRVVVTLAPALADYANMASELLHWE
GPAIDDMNSQLAFFLPKHAVTVHGIGHLQHLPRYIEAMRIRLEDMRLDPDRDADRQSVID
AVKRYLAQRMKSLPAGRTKTKAYKDILWLIEELRVSLFAQRLGTPKPVSQRRIEKKIDAL
R
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcacgcatcccccactactccgccgacgaagccgcagttgtacgaggcgttg
gacggtgtcccgatcgccgatgtccgcaggttccggcgacgcttgaaaaacgccaaatcg
cccgaggcgctcgcagcgattgcaggcgacgtggcagcagcacgggcagccgtggacgag
cgcaacgcgcacatccccgagatcacctacccggaacaactcccggtctccgcccggcgc
gacgacatcatggagctggtgcgcgacaaccaggtggtggtcattgcaggcgaaaccggc
tccggcaagaccactcagattccgaagatgttgctggagctgggccgcggacgccgcggc
ctgatcgggcacacgcagccgcgcaggctggccgcacgcacggtggcagagcgcatcgcc
gacgagctgggccaagacatcggcgaatccgtcggctacgccatccgtttcgacgaccgc
gtgtccgaatccaccgcagtcaagctgatgaccgacggcatcctgctcgcggagatgcag
cgcgacaggttcttaaacgcctacgacacgatcatcatcgacgaggcgcacgagcgctca
ctcaacatcgactttctgctcggctacctcaaacgcctgctgccgaaacggccggatttg
aaggtcattgtcacttccgcgaccatcgaccccgaggcgtttgcctcccacttcgccgac
gccgacggcaacccggcacccattatcgaggtctcgggccgcacctacccggtggagatc
cgctaccgccccctagtagagcaggtgcaggcgaaggacggttccgtcaaggagatcgac
accgacatgatcgacggtgtcgtcgacgcctgcaaagagctcatgcgcgaaggcgagggc
gatatcctgtgctttttcgcctcggaacgagacatccgcgactgtatggaggccattgaa
aagcagcactggcgcggcgtggaggtcgtgccgctgttcggccggctgtccaacgccgag
cagcaccgggtgttctcaccgcactccggcaggcggatcgtcctttccaccaacatcgcg
gagacctctttgacggtaccgggcatccactacgtggtggataccggtttggcccgcatt
tcgcgctactccacacgcaccaaggtgcagcgcctgcccatcgaggagatctctcaagcc
tccgccaaccagcgctccggccgctccggccgcaccgccgatggcgtggctatccgcctg
tactcggaggacaacttcgaggcccgccaggaattcacagacccggaaatcttgcgcacc
aacctcgcgtctgtggttttgcagatgatctcgctgcgcctgggagacatcaccgagttc
cccttcatccagccgccagaccacaaggccgtgcgcgacgggctgcttttgttgcacgag
ctgggcgcgatttccgacaaggagcgcggcggggtgccagtgctcacggcggtcggacga
gacatcgcccgcatcccggtcgatccgaagatggcccgcatgctcgtagaagccaaccgc
ctcggcgtgctcgacgacgtcaccgtcatcgtcgccagcatgaccatccaagacgtccgg
gagcgcccgctggaacaccaggcacaggcggaccaggcgcatgccaggttcaaagacgcc
acgtcagacttcttggcgtcgctgaagctgtgggactacatcggcgactcgcgccacgag
ctgtccggcaacgccttccgcaaacgcatgaagcgcgaattcctgcactacatgcgcatc
cgcgagtggttcgacctcgtgcgccagctgcgcgacgtcgaacgccagctggggtggtcg
cgcgcggaaaacgttgcaggcgaccgcgacgcagacgcgatacacaagtcgttgctcacc
ggcttgctgtccaacatcggcgcgcgtgacgggaactcgaaggagttccaaggcgcgcgc
ggtacgcggtttctggtcttccctgggtcgtcgctaagcaaaaagccccctgagttcatc
atggccgcagaactggtggaaacttcgcgcctttgggcgcgcgacgtggcaaagatcgag
ccggcctgggtcgaagctgccgccggcgatttgctcaagcacagctactccgagccaatc
tggtcacgtaaacgctctgccgcaatggtccaccaaaaatccatgctctacggcgtgacc
atcgtgcgcgaccggctggtgccctaccaccgcgttgaccccgcgggtgcgcgcaatatg
ttcatccgccacgccttgctggagggtgattggaaccgccaccaccacttcatcgaccac
aacgaggcgctgctggctgaggctgccgaggtggaggaaaaggtgcgccgccgcggctta
gtggtcgacgaggacacactgttcgagttttacgacgcacgcctgcccgaggacgtcacc
accgcacgccacttcgactcctggtggaagaagaagcgcgccaaggacaagcactacctc
gactttgatccggcgacactgctggacgacgaaggcgtggactcctccaccaacgccttt
cccgaagtctggcagcaaggcaccatcgactacgcgctgcgctacaagttcgagccgggc
gatcctttcgacggcgtgaccgtcgacgtacccgtcccgctgttggcgaacctcagcccg
cacggctttgactggctcgtgccggggctgcgctcagaactggctgccgaatacatccgg
accctgcccaaggcactgcgcaaaaccgtggtgcccgcaccggacttcgcggaacgcgcg
ctcgagctgatacaaaaccgaaaggccgcggacggcgcgagtgagcagcagttgcggcag
gagcccttcggcgacgtcttggcagacgcactgcgctcgatcggcggacgcggcatcaat
ggctccgacttcaacccagctgccctgcccgcgcacctgaaggtgacgttcgcggcgatc
gacaggcgcggcaaggtcgtcgaccacgacaaagacctcgacgccttaaaacgccggcaa
gcgggcaagatcaagtcttcggtgtccaaggcggggcgcacctccgagtctgaagctgta
gcgaagtggaccgcagactctttgggcgctgtgccggaaaccgtcaccaccacgatcgac
ggcaacgacgtcgacgccttcccggcactggaagccacgaaggacggtgtgaaggtcacg
gtgcatccgacgaaggccgccgcagacgcctccatgatcaccgcgacactgacgctgctg
ttgcgcgagatcaccgtcaaccccacccagatgacgaaggggctgccactgcgtcaaaag
gtggccgtggaccgctacccgcacggcggcgccgagggtctggtggaagatgcccgagtg
gccgtcatccgcgatgtgatgctctccagcggcgggccggtgcgctcgcctgaggagttt
gaggcgctggttgcagagatccggccgcaggtcgctggcgcggtacggcgagtagtagtc
acgctcgctccggcgctggcggattacgccaacatggcttcggaattgctgcattgggaa
ggcccagccattgacgacatgaactcgcagctcgcgtttttcctgcctaaacatgctgtg
accgtgcacggtatcggccatctacagcacctgccgcgctacatcgaagccatgcggatc
cgcctggaggatatgcggctggacccggaccgggatgccgacaggcagtccgtgatcgat
gcggtcaagcgctatttggcgcagcggatgaagtccctccccgcgggccgaacgaaaacg
aaagcgtataaggacatcttgtggctcatcgaagagctgcgggtgagcttgttcgcacag
cgattgggcacaccgaagccggtgagccagcggcgcatcgagaagaagatcgacgcgttg
cggtaa
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