Campylobacter fetus subsp. testudinum pet-3: CR44_08885
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Entry
CR44_08885 CDS
T03583
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cfp
Campylobacter fetus subsp. testudinum pet-3
Pathway
cfp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CR44_08885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfp03019
]
CR44_08885
Messenger RNA biogenesis [BR:
cfp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CR44_08885
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Y_phosphatase
MupG_C
T6SS_Tle1-like_cat
DUF1335
DUF2508
Motif
Other DBs
NCBI-ProteinID:
AJB46291
UniProt:
A0AAX0HAU0
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Position
complement(1762295..1764013)
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AA seq
572 aa
AA seq
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MEANRASHELRLNPLKYLNSSEHKIKITPLGGLGEIGGNMTVFETENDAIIVDIGMSFPS
ESMHGVDILIPDFDYIRKIKQKVRGIIITHAHEDHIGAVPYFFKEFQFPIYATPLPLGMI
SNKFEEHGLKAHRSYFRPMEKRKPYVIGDFEIELIHITHSIIDASALVITTKAGTILHTG
DFKIDHTPIDGYPTDLNRLAYYGERGVLCMLSDSTNSYKEGITKSESSVGKTFDSIFATS
TGRVIMSTFSSNIHRVYQAIERGVKHGRKVCVIGRSMERNLWTAIELGYVNLDKKIFIDA
NEVSKYPDNEVLIVTTGSQGETMSALYRMATDEHKYIKIKPTDQIIISSKAIPGNETSVS
TVLNYLLKSGASVAHQDFSEIHVSGHAAQEEQKLMLRLVKPKFFLPVHGEYNHIVRHKET
AVACGVDERNTYLMSDGDQIEVCQKYIKRVKTVKTGKVFIDNQINKQISDDVVIDRQKLA
EAGVVTIISQIDKNAKTLIQNRVISYGLVSERQSKNLSKEMEEILLQFLSNVKDELLHDQ
RALENQIRQVIRKHIFRKIKKYPTIVPVVYLM
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atagaagcaaatagagcctctcacgaattaagacttaatccattaaaatatctaaactca
agcgaacataagatcaaaataactccgcttggcggtcttggcgagatcggtggaaatatg
actgtgtttgagactgagaatgacgctatcatcgtggatatcggtatgagttttccaagc
gagagtatgcatggtgtggatattttgatacctgattttgattatatacgtaagataaaa
caaaaagttcgcggtatcatcataactcacgcacacgaagatcatataggagctgttccg
tattttttcaaagaattccagtttcctatttatgcaactccgcttccattaggaatgata
agcaataaatttgaagaacacggtctgaaggctcatagaagttactttcgtccaatggaa
aaaagaaaaccttacgtgatcggcgactttgagatagagcttatccatatcactcactcg
attatagatgcgagcgcattagttatcactacaaaagctggaacaattcttcatacagga
gattttaagatagatcatactccaattgatggctatccgacagatttaaatagacttgcg
tattacggtgagcgcggcgttttatgtatgttaagcgactctacaaatagctataaagag
ggcattacaaagagtgaaagtagcgtaggaaaaacgtttgactctatctttgctacttca
acaggtagagttattatgagtacttttagctcaaatatccaccgtgtttatcaagccatt
gagcgcggtgtaaaacatggtagaaaagtttgtgttataggtagaagtatggagagaaat
ctctggactgctatcgagctaggatatgtaaatttagataagaagatatttatcgatgca
aatgaagttagtaaatatcccgataatgaagttctcatagtaaccactggaagtcaaggt
gagactatgagcgcactttatagaatggcgactgatgaacataaatatatcaaaatcaaa
ccaacagatcagataatcatcagctcaaaagcgatccctggaaatgaaacaagtgtatca
acggtgcttaattatttgttaaaaagcggtgctagcgtagctcatcaagactttagtgaa
attcacgtaagcggacacgcagcccaagaagagcaaaagcttatgctaagacttgtaaaa
cctaaatttttcttaccggtgcatggtgagtataatcatatagtaagacacaaagagact
gctgtagcatgtggagttgatgagagaaatacttatcttatgagtgatggcgatcagata
gaagtttgtcaaaaatatataaaaagagtaaaaactgtaaaaacaggtaaagttttcata
gacaatcaaataaataagcaaatttctgatgatgttgttatagatagacaaaaattagct
gaggctggagtggtaaccataatatctcagatcgataaaaatgctaaaactttaattcaa
aatcgtgttataagttatggtttagttagtgaaagacagagcaaaaaccttagtaaagag
atggaagagatacttctacagtttttaagcaacgtaaaagatgagctgcttcacgatcaa
agagcgttagaaaatcaaattaggcaagttattagaaagcatatatttagaaagattaaa
aagtacccaaccatcgttccggttgtgtatttgatgtga
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