Citrobacter freundii complex sp. CFNIH3: C2U38_04250
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Entry
C2U38_04250 CDS
T06381
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Pathway
cfq03030
DNA replication
cfq03430
Mismatch repair
cfq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U38_04250
03430 Mismatch repair
C2U38_04250
03440 Homologous recombination
C2U38_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfq03032
]
C2U38_04250
03400 DNA repair and recombination proteins [BR:
cfq03400
]
C2U38_04250
Enzymes [BR:
cfq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C2U38_04250
DNA replication proteins [BR:
cfq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C2U38_04250
DNA repair and recombination proteins [BR:
cfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C2U38_04250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AUV24933
LinkDB
All DBs
Position
866103..869585
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVRSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDW
LAELKEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFLELIRTGRQDEEN
YLHAAVELAERRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVAKSREGL
EERLAFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLNDALKAADQHAKAEATGQADMFGVLAEEPEQIEQSYANCTPWPEQVVLEGERETLGLY
LTGHPINQYLKEIERYVGGHRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGTTWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctcgtttcgtccacctgcgggtgcacagcgactactccatgatcgatggg
ctggcgaaaaccgggccgctagtgaaaaaggcggccgcgttaggcatgcctgcgctggcg
atcaccgattttaccaacctgtgtggtctggtgaagttttacggagcgggtcacggtgcg
ggtatcaagccgatagttggcgcagattttcatgtccgtagcgaactgctgggcgatgaa
ctcacgcagctcaccgtgctggccgcaaataataccggctatcagaacctgacgttgttg
atatcgaaagcctatcagcgtggttatggcgcagaagggccggtcatcgaccgggattgg
ttggccgagttaaaagaaggtttgattttgctctctggcggccgcatgggcgacgtcggg
cgcagcctgctgcgcggtaatagcgcgctggttgatgagtgcgtagcgttttacgaagaa
cattttccaaattgttatttcctcgagcttatccgcaccggcaggcaagatgaagaaaat
tatctgcatgcagcggtagaactggcggaaagacgtggtcttccggtggtggcgaccaac
gatgttcgtttccttgaaaccggtgattttgacgcgcatgaaatccgcgtggcaatccat
gacgggttcacccttgacgacccgaaacgcccgcgaaattattcgccgcagcagtacatg
cgtagcgaagatgagatgtgcgagctgttttccgatattccggaagcgctgcaaaacacc
gttgagatagctaagcgctgtaacgtgacggtacgtctgggtgagtatttcctgccacag
ttcccgaccggtgatatgaccaccgaggatttcctcgtggcgaaatcgcgcgaaggtctg
gaagagcgtctggcgtttttgttcccggaccctgaagttcgcgcccagaagcgcccgcct
tatgacgaacgtctggaagttgaactgaaagttatcaaccagatgggattccctggctac
ttcctgatcgtgatggaatttatccagtggtcgaaagataacggcgtaccggtaggccct
ggacgtggttccggtgccggctcgcttgtcgcctatgcgctgaaaattaccgacctggat
ccgctggaatttgacctgctgttcgaacgattcctgaacccggaacgtgtctcaatgccc
gacttcgacgttgacttctgtatggagaaacgcgaccgggtaattgaacacgtggcggaa
atgtacggtcgtgatgctgtttcgcagattattaccttcggtacgatggcggccaaagcg
gttatccgtgacgtggggcgcgtgctgggacacccgtacggcttcgttgaccgtatttcg
aaactggtgccacccgatccgggcatgacgctggcaaaagcctttgaagccgaaccccaa
ctgccggaaatctatgaggcagatgaagaggttaaagcgctgatcgatatggcgcgtaag
ctggaaggcgtcacgcgtaacgccggtaaacacgccggtggtgtagttatcgcgccgacc
aaaattaccgattttgcgccgctgtactgcgatgaacaggggctgcacccggttactcag
tttgataagaacgacgtggaatatgccggccttgtgaagttcgacttcctcggcctgcgt
acgctcaccatcatcaactgggcgctggaaatgattaacgcgcgccgtgaaaagaacggc
gagccgccgctggatatcgccgctatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggagaccacggcggtcttccagctagaatcccgcggcatgaaagatcttatc
aaacgtctgcagcctgactgcttcgaagatatgatcgccctggtggccctgttccgtcca
ggtccgctacagtcggggatggtagataactttatcgaccgtaagcatggtcgcgaagag
atttcctacccggacgtacaatggcagcatgagtgtctgaaaccggtactggagccgacc
tacggcattatcctgtatcaggaacaggttatgcagattgcccaggagctgtccggatat
acccttggcggtgcggacatgttgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gctaagcagcgcggcacctttgaagaaggggcgaaaaagcgcggcgtcgacggcgaactg
gcgatgaaaatctttgacctggtggagaaattcgccggttacggatttaacaaatcgcac
tccgctgcctatgcgctggtctcttaccagacgctatggctgaaggcgcattaccccgcc
gagtttatggcggcggtaatgaccgccgatatggataacaccgagaaagtggtcgggctg
gtggatgaatgctggcgtatggggctcaaaatcctgccgccggatatcaactccgggctt
tatcattttcacgtgaatgatgatggcgaaattgtctatggcatcggcgcgataaaaggc
gtgggtgaagggccaattgaagctattattgaggcgcgcaacgaaggcggttacttccgc
gagctgtttgatctctgtgcgcgcacggacatcaaaaaactcaaccgccgggtgctggaa
aagttaatcatgtccggggcgtttgaccgccttggtccgcatcgtgcggcgctgatgaat
tcgctcaacgatgcgctaaaagccgccgatcagcatgcgaaagccgaggcaacgggtcag
gcggacatgtttggcgtgctggctgaagagccggaacaaattgaacagtcttatgctaac
tgtacaccgtggccggagcaggtggtattagaaggggaacgtgaaacgttagggctttac
ctgacgggacaccccatcaaccagtatttaaaagaaattgagcgctatgttggaggccac
aggctgaaagacatgcatccgacagaacgtggtaaagtcaccacggctgcggggctcgtc
attgctgcgcgggtaatggtcaccaagcgcggcaatcgtatcggcatctgtaccctggat
gaccgttccgggcgtctggaagttatgttgtttaccgacgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgatggcccgtgaagtcatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctcggggacaattccagtacatctctactatcag
agggcggatgcacgtgcgcgattgcgttttggcacaacgtggcgtgtctctccgagcgat
cgtttgctaaacgatctccgtggccttattggttcggagcaggtggaactggagtttgac
taa
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