Citrobacter freundii complex sp. CFNIH3: C2U38_08060
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Entry
C2U38_08060 CDS
T06381
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Pathway
cfq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U38_08060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfq03400
]
C2U38_08060
DNA repair and recombination proteins [BR:
cfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U38_08060
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C2U38_08060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
SBDS_domain_II
AAA_30
UB2H
IF2_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUV25584
LinkDB
All DBs
Position
1606299..1608320
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISR
YTIYPKTHYVTPRERIVQAMEEIKVELAERRKVLLANNKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGDDVVDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITASMAKAIGETERRREKQQLYNEEHGITPQGLNKKVVDILALG
QNIAKTKAKGKGKSRAGAKSEIVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAATIRD
QLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactaaattccgcttttaaaccctctggcgatcagcctgaggct
attcgccgtctggaagaagggctggaggatggtctggcgcatcagacgctgctgggggtg
acgggctcggggaagacattcaccatcgctaacgtaattgcggacttgcagcggcctacc
atggtgctggctcccaataagacgctggccgcgcagctgtacggtgagatgaaagagttc
ttcccggataacgcggtggagtatttcgtctcctactacgactattatcagccggaagcc
tacgttccaagttctgacaccttcatcgagaaggatgcctcggttaacgaacatattgag
caaatgcgtctgtcggcgaccaaagcgctgctggaacgtcgggatgtcgttgtcgtcgcg
tcagtttccgctatctatggtttgggcgatccggatctgtatctgaaaatgatgctgcac
ctgacggtggggatgattatcgaccagcgtgcgatcctgcgtcgcctggcggaactgcaa
tatacccgcaacgatcaggcatttcagcgcggaaccttccgcgtgcgtggtgaagtgatc
gacattttcccggctgaatccgacgatatcgcgctgcgcgtggaattgtttgatgaagag
gtcgaacgtttatcgctgtttgacccgcttaccgggcaggttgaatccacgatttcgcgc
tacaccatctatcctaaaacgcactacgtgacgccgcgcgaacgtatcgtgcaggcgatg
gaagaaatcaaagttgagctggcagagcggcgcaaggtcctgctggcaaataacaaactg
ctggaagaacaacggctaagtcagcgtacgcagttcgatctggaaatgatgaatgagctg
ggttactgctcggggattgaaaactactcccgctatctgtccgggcgtggccccggcgag
ccgccgccgacgctgtttgattacctgcctgccgacggcctgctggtggtggatgaatcc
cacgtcactatcccgcaaattggcggtatgtatcgtggtgaccgggcgcgtaaagagact
ctggtcgaatacggattccgtctgccgtcggcgctggataaccgtccgcttaaatttgaa
gagtttgaagcgctggccccgcagaccatctacgtctcagcgacgccgggcaactatgaa
ctggagaaatccggtgatgacgtcgtcgatcaggtagtacgaccgaccggcctgctggat
cctatcattgaggtacgcccggtggcgacgcaggttgacgatctgctgtctgagatccgc
atccgtgcggcgattaacgaacgtgtgctggtcactacgctcacgaaacggatggcagag
gatctcaccgaatacctcgaagagcacggtgagcgggtgcgctatctgcactcagacatc
gataccgtggaacgtatggaaatcattcgtgacctgcgtctgggcgagtttgacgtgctg
gtgggtatcaacctgttacgtgagggtctggacatgcctgaggtctcactggtggcgatt
ctggacgcagacaaagaagggttcctgcgttctgaacgttcgcttattcagaccatcggt
cgtgcggcgcgtaatatcaacgggaaggctattctctacggcgacaaaattaccgcctca
atggctaaggcgataggtgaaactgaacgccgtcgtgagaaacagcagctctacaacgaa
gaacacggtattacgccgcaggggctgaacaagaaagtggtcgatattctggcgctgggt
cagaatattgcgaagactaaggcgaaaggcaaagggaagtcacgcgcaggcgcgaagtct
gaaattgtcgaactggatatgacgccaaaagcgctgcagcagaagattcatgagctggaa
gggcagatgatgcagcatgcgcagaatcttgaatttgaagaggctgcgacaatccgcgac
cagttgcatcagttgcgcgagttgtttatcgcggcatcgtaa
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