Citrobacter freundii complex sp. CFNIH3: C2U38_09435
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Entry
C2U38_09435 CDS
T06381
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Pathway
cfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U38_09435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfq03019
]
C2U38_09435
03009 Ribosome biogenesis [BR:
cfq03009
]
C2U38_09435
Enzymes [BR:
cfq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2U38_09435
Messenger RNA biogenesis [BR:
cfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2U38_09435
Ribosome biogenesis [BR:
cfq03009
]
Prokaryotic type
rRNA processing factors
C2U38_09435
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AUV25836
LinkDB
All DBs
Position
complement(1883184..1886432)
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPMEEEFVERKQPEQPALATFAMPEVPPA
PALQEPTAKAAAPKAAAATAAVAAQPGLISRFFSALKSIFSGSEEVKPVEQPAPKAEEKT
DRQQDRRKPRQNNRRDRNDRRDNRDNRGERDNRNERSESGENREDNRRNRRQSQQQNAEA
RDNRQQSTDVADKAKSGDDQQAPRRERNRRRNDDKRQAQQEVKELNLAEQPAQDTEQEER
VRQPQTRRKQRQLTQKVRYTDSPAVEAEVATAEVVTETAVTQPTEQPVPAQRTELAKVDL
PAVVATEQEDNSEARDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSPMPLTVACAS
PELASGKVWIRYPVARPQDQQVAEQREQETVQGQTAPVAVEPQVAAAAVEHIVNAPASVE
TVQPEVVIAEPQATVVETTHPEVIATPVEEQPQIIAESDAPVAEDTAAKAEPVAEIVAAP
VVEESAEVVISQPEVAEEIAEVVETAPVAEEVAAPQEVVAAPVVEDTVAKAEVVATRIDA
EHLHSHAAAPMTRAPAPEYVPEAPRHSDWQRPEFAFEGKGAAGGHSATHQATAPATRPQP
IE
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcgactcagcaggaagagttgcgtgtcgcccttgtagat
gggcagcgtctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagccaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatacttccccgct
agctacaactcccatggtcgtcccaacattaaagacgtgttgcgcgaaggtcaggaagtc
attgttcagatcgataaagaagaacgcggcaataaaggcgctgcgctgaccacctttatc
agcctggcaggtagttatctggttctgatgccgaacaacccgcgcgcgggcggcatctcc
cgtcgcattgaaggcgacgaccgtaccgaattaaaagaagcgctggcaagcctggaactg
cctgatggcatggggcttatcgtgcgtaccgcaggtgtcggcaaatctgccgaagcgctg
cagtgggacctgagtttccgcctgaagcactgggaagcgattcaaaaagccgctgacagc
cgccctgctccgttcctgatccatcaggaaagcaacgttatcgttcgcgcattccgtgac
tatttacgtcaggacatcggcgaaatcctcatcgacaacccgaaagttatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaattccgctgttcagccactatcaaatcgaatctcaaattgagtccgcgttccag
cgcgaagtgcgtctgccgtccggcggctcaatcgttatcgacagcacagaagcgctgacc
gctatcgatatcaactccgcacgcgcgacccgcggcggcgacatcgaagaaactgcgttc
aacaccaaccttgaagcagccgatgaaattgctcgtcagttgcgtctgcgtgacctcggc
ggcctgatcgtaatcgacttcattgatatgacgccggttcgtcaccagcgtgcggttgaa
aaccgtctgcgtgaagccgtgcgtcaggacagagcgcgtattcagatcagccatatttct
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggtgaatccagc
catcacgtatgcccacgctgctccggcacgggtaccgtacgtgataacgaatcactgtcg
ctgtctattctgcgtctgatcgaagaagaagcgctgaaagaaaatacgcaggaagttcac
gctattgttcctgtgccgatcgcatcctacctgctcaacgaaaaacgtaccgcggtaaat
gctatcgagacacgtcagaatggcgtgcgctgtgtgattgtgccaaacgatcagatggaa
actccgcattactccgtgctgcgcgtacgcaaaggggaagaaacaccaaccctgagctac
ctgctgccaaaactgcatgaagaagcgatggcattgccgatggaagaagagttcgtcgag
cgtaaacagccagagcagccggcattagccacctttgcaatgccagaggtgccgccagcc
cctgctttgcaggaacctactgcgaaggccgccgcgcctaaagccgcagcagcgaccgcg
gccgtcgccgcgcagccaggtttgattagccgtttcttcagcgcactgaagtccatcttc
agcggtagcgaagaagtgaaaccggttgaacaacctgcgccgaaagctgaagagaaaacc
gatcgccagcaggatcgtcgtaaaccgcgtcagaacaatcgtcgcgaccgtaacgatcgt
cgtgataatcgcgacaaccgtggcgagcgtgataaccgtaacgagcgttcagaaagcggt
gaaaaccgtgaagataaccgccgtaaccgccgtcagtcgcagcagcaaaatgcggaagcg
cgcgataaccgccagcagtctactgacgtcgccgacaaagcgaaatccggtgatgaccag
caggctccgcgtcgcgagcgcaaccgccgtcgcaacgatgataagcgtcaggcgcagcag
gaagttaaagagctgaatctggcagaacaacctgcgcaggataccgagcaggaagagcgc
gttcgtcagcctcagactcgccgtaaacagcgtcagctgactcagaaagttcgttacaca
gacagcccggctgttgaagccgaagtcgcgactgccgaggtggtcactgaaacggctgtc
actcagccaactgaacagcccgtaccggcacagcgtactgaactggcgaaagttgatcta
cctgccgtcgttgcgactgagcaggaagacaacagcgaagcgcgtgactctaatggtatg
ccgcgtcgttcccgtcgctcacctcgccatctgcgcgtcagtggacaacgccgtcgtcgc
tatcgtgacgagcgttacccggttcagtcgccgatgccgttaacggttgcctgcgcatct
ccagaattagcgtccggtaaagtctggatccgctaccctgttgctcgtcctcaggatcag
caggttgcagagcagcgcgagcaggaaacggttcaggggcaaactgcacctgtcgccgta
gagcctcaggttgctgcagctgccgttgagcatattgtgaacgcccctgcgtcggttgaa
accgtacagccagaggtggtcattgctgaacctcaggctaccgtcgttgaaaccacgcat
ccggaagtcatcgctactccggtcgaggaacaaccgcaaattatcgctgaatctgacgcg
cctgttgctgaggataccgcggcgaaagccgaacctgtcgctgaaattgtggctgcgccg
gttgtcgaagaatctgcggaggttgttatttctcagcctgaagtggctgaagagattgcc
gaggttgtggaaacagcgccagtggctgaagaagttgccgcgccgcaagaggttgttgcc
gcacctgtcgtcgaagacacagtcgctaaggctgaagttgtcgcaacccgcattgacgca
gaacatcttcacagccacgcggccgccccgatgacccgtgctccggcaccagagtatgtg
cctgaagcgccgcgtcatagtgactggcaacgcccggaattcgcctttgaaggtaaaggt
gccgcaggtggacacagcgccacgcaccaggcgactgcgccagcaacgcgcccgcagccc
attgagtaa
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