Citrobacter freundii complex sp. CFNIH3: C2U38_09710
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Entry
C2U38_09710 CDS
T06381
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Pathway
cfq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U38_09710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfq03400
]
C2U38_09710
Enzymes [BR:
cfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2U38_09710
DNA repair and recombination proteins [BR:
cfq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2U38_09710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUV25878
LinkDB
All DBs
Position
complement(1936351..1939797)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPTGASDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLPDWETLPYDSFSPHQEIISSRLSTLYQLPAMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPTGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDIETSAARFQADTL
SRFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLPKKAANTNLGFQKLPD
IAVQAQQKAPLDALRKFLEGFTGPVIFSVESEGRREALGELLARIKVAPKRILRLDEAVD
NGRYLMIGSAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQADVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVMRGGQVYYLFNDVENIQKTADRLAELVPEARIGI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMESIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDNYIPDV
NTRLSFYKRIASAKGETELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFMQELGERKARIDWVRQFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgctcccaacgggcgcttccgatcagcgccagttgggt
gagcttacgggtgccgcctgcgcaacgctggtcgccgaaatcgccgaacgtcacgcgggt
ccagtggtgctgatcgcgccggacatgcaaaatgctttgcgtctgcatgatgaaattcgt
cagtttactgaccagatggtgatgaacctgcccgactgggaaacgcttccctatgacagc
ttttctccccatcaggagattatctcctcacggctctccacgctgtatcaactgcctgcc
atgcaacgcggtgtgctgatcgttccggtaaatacgctgatgcagcgtgtctgtccgcac
agctatctgcacggtcatgcgctggtcatgaaaaaaggccagcggctttcgcgcgacgcc
ctgcgcgaacaactggacagtgctggctaccgccatgttgatcaggtcatggaacacggc
gaatacgccacgcgtggcgcgttgttagatctgttcccgatgggcagcgaattgccttat
cgtctggatttctttgatgacgaaatcgacagcctgcgtctgtttgatactgacactcag
cgcacgctggaagaagtcgatgccattaatttgctgcccgcacacgaattcccgactgac
aaaacggccatcgagctgttccgtagtcagtggcgtgatacgtttgaggtaaaacgcgac
gccgagcatatttatcaacaggtcagcaaaggcacgttacctacggggattgaatactgg
caaccgctgtttttcagcgagcctctgccgccgctgttcagctacttccccgccaatacg
ttattagtaaatactggcgatatcgagaccagcgctgcacgcttccaggccgataccctg
tcacgctttgagaatcgcggcgttgatccgatgcgcccgcttctgccaccggaatcgctg
tggctgcgggttgatgagctgttttctgaacttaaacgctggccgcgtgttcagttgaaa
accgagagtctgccgaagaaagcggcgaataccaacctcgggttccagaaactgccggat
atcgccgttcaggcacagcaaaaagcaccgttagatgcattacgtaaattccttgaaggc
tttaccggtccggtaattttctcggtggaaagtgaaggacgccgggaagcactaggcgaa
ctgctcgcccgcatcaaagtcgcgccgaagcggatattgcgactcgacgaagccgtagac
aacggtcgttatctgatgattggctcagccgagcacggcttcatcgatagcaaacgcaat
ctggcgctgatttgtgaaagcgatctgctcggtgaacgcgtggcgcgtcgccgccaggat
tctcgtcgcaccatcaacccggatacgttaattcgtaacctcgcggagctacatcccggt
cagccagtggtgcatctggagcacggcgtgggtcgctatgcaggtatgaccacgctggaa
gcaggcggcattaccggtgaatacctgatgctcacctatgccaacgacgccaaactgtac
gtgccggtgtcgtcgctgcatctgataagccgctacgccggcggcgcggaagagaatgcg
ccgctgcataaactgggcggtgatgcctggtcacgcgcccgacagaaagccgctgagaaa
gtccgcgatgtcgcggcagagctgctggatatttatgcccagcgcgcagcgaaagaaggc
tttgcctttaaacatgaccgtgaacagtaccagctgttttgcgacagcttcccgtttgaa
accacgcccgaccaggcgcaggcgatcaacgcggtactcagcgatatgtgtcaaccgctg
gccatggaccgcctggtgtgtggtgatgtcggctttggtaaaaccgaagtcgcgatgcgt
gccgccttcctcgccgtagagaatcacaagcaggttgccgtgttggtaccgaccaccctg
ctcgctcagcagcacttcgacaacttccgcgaccgctttgccaactggccggtacgcatt
gagatgctgtcccgtttccgtagcgccaaagagcaagcgcagattctggagcaggttgcc
gaaggtaaaatcgatattctcatcggcactcacaaactgctgcaagcggatgtgaagcta
aaagatctggggctgctgattgtcgatgaagagcaccgtttcggcgttcgccacaaagaa
cgtatcaaggcaatgcgcgcggatgtggatattctgactctgacggcaacgccaattccg
cgcacgctcaacatggcgatgagcggcatgcgcgatctgtcgatcatcgccacaccgccc
gctcgtcgtctggcggtcaaaacctttgtgcgcgaatatgacaacctggtggtacgcgag
gctatcctgcgtgaagttatgcgcgggggacaagtttattatctctttaacgacgtcgaa
aatatccagaaaaccgctgacagattagcggaactggtgccggaagcgcgcattggtatc
ggccacgggcaaatgcgcgagcgcgagctggaacgcgtgatgaacgatttccaccaccag
cgttttaacgtgctggtgtgtaccaccattatcgaaaccgggatcgacattcccactgcc
aacaccatcatcattgaacgagctgaccacttcggtttagcgcaattgcatcagctacgg
ggtcgtgtgggacgctcacaccatcaggcatacgcctggctgctaacgccgcatccaaaa
gcgatgaccaccgacgcacaaaaacgcctggaagccatcgcctcactggaagatttaggt
gcaggttttgcgctggcgacccacgacctcgaaattcgcggcgcaggggaactgctgggc
gaagatcaaagtggctccatggaaagcatcggtttctcactgtatatggagctgctggaa
aacgctgtcgatgcgctcaaagaagggcgtgaaccgtcgctggaagatctcaccagccag
caaaccgaagtcgaactgcgcatgccatcgcttctgccggataactatatcccggatgtc
aacacgcgactgtcgttctacaagcgcattgccagtgcgaaaggcgaaaccgagctggaa
gaaattaaggtcgagctgatagaccgttttggcctgctgcccgacccggcccggacgttg
ctggatattgcccgtttacgccagcaggcgcagaaactggggatcagaaagctcgaaggc
aatgaaaaaggcggtactattgagtttgccgagaaaaaccatgttaacccagtctggcta
attggtttactgcaaaaacaaccgcagcacttccgtctggatggtccaacacgcctgaaa
ttcatgcaggaattgggcgagcgtaaagcacggatcgactgggttcgccagtttatgcgc
cagcttgaagagaacgccatagcctag
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