Citrobacter freundii complex sp. CFNIH3: C2U38_11610
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Entry
C2U38_11610 CDS
T06381
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfq03019
]
C2U38_11610
Enzymes [BR:
cfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C2U38_11610
Messenger RNA biogenesis [BR:
cfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C2U38_11610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
NTPase_1
ABC_tran
AAA_16
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AUV26209
LinkDB
All DBs
Position
2316270..2320172
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFNMLQQQLDSLMLRDRQRFARRLQGVKKVKNPDAQQAIYQEMAKEIDHAAGK
VVLREAARPVISYPENLPVSQKKQDILEAIRDNQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKLDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVVSARHFDSWWKKISRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQIEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLQEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLADIKSQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattaaccttcaacatgttgcagcaacagctggattcactgatg
ctgcgtgacagacagcgttttgcccgccgcctgcagggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcaaaagagattgatcacgctgcaggtaaa
gttgtgctgcgtgaagccgcgcgtccggtcatcagctacccggaaaacctgcccgtcagt
cagaaaaaacaggatattctggaagcgatccgcgataaccaggtggtgattgtcgctggg
gaaacgggatcagggaaaaccactcagttacccaaaatctgtatggagctcgggcgcggg
gtaaaagggctgatcggccatacccagccgcgtcgtctggcggcgcgtaccgtggcgaac
cgtattgcagaagagctgcaaaccgagccgggcggttgtatcggttataaagtccgtttt
agcgatcatgtcagcgacaacaccatggttaagctgatgacggacggtatcttgctggcg
gaaatccagcaggatcggctgctgatgcagtacgacaccatcatcatcgatgaagcgcat
gagcgcagcctgaatatcgattttctgctcggttatctgaaagagctcctgccgcgccgt
ccggatctaaaaattatcatcacttcggcgaccatcgatccggagcgtttttcaaagcat
ttcaataatgcaccgattatcgaagtctctggtcgaacctatccggtggaagttcgctat
cgtccaattgttgaagacgcagatgacaccgagcgtgaccaattgcaggcaatttttgat
gccgtagatgagttaggccgtgaaagtcagggcgacattttgatcttcatgagcggcgag
cgcgaaatccgcgataccgccgatgcgctgaataagctggatttgcgccataccgaagtg
ctaccgctttatgcgcgtctttccaacagcgagcagaaccgtgtgttccagtcgcacagc
ggtcgccgtatcgtgctggcgaccaacgtggcggaaacctcgctgaccgttccggggatc
aagtatgtgattgatccgggtactgcgcgtatcagccgttacagttaccgcaccaaagtt
cagcgcttgccgattgaaccggtgtcgcaggcctctgccaaccagcgtaaaggccgttgc
ggtcgtgtttcggaggggatctgtattcgtctgtattctgaagacgatttcctgtcgcgc
ccggagtttaccgacccggagatcctgcgtaccaacctggcgtccgttattttgcagatg
accgccttggggctgggcgatatcgcggcgtttccgtttgttgaagcgccggataaacgt
aacattcaggacggtgtacgcctgctcgaagaactgggggcgataaccaccgacgaacag
gcaaccgcttacaaactgacgccattgggccgtcagctctcgcaactgccggtggatcca
cgcctggctcgcatggtgctggaagcgcaaaaacatggctgcgtacgtgaggcgatgatt
atcacctcggcgctgtctattcaggatccgcgcgagcgcccgatggacaagcagcaggcc
tccgacgagaagcatcgccgtttccacgacaaagagtctgatttcctcgcatttgtgaat
ctgtggaactatctcggcgagcagcagaaagcgctgtcgtcaaaccagttccgtcgtcag
tgcaaacttgattttctgaactacctgcgcgtgcgtgaatggcaggatatctacacgcaa
ctgcgtcaggtggtgaaagagttagggattcctgttaacagcgaacccgctgaatacaga
gagatccacgtcgcgttgctgaccggtttactgtcacatattgggatgaaagatgccgat
aaacaggaatttaccggggcgcgtaacgctcgcttctcgatcttcccgggctctggtcta
tttaaaaaaccgccgaagtggacgatggtagcggagctggtggaaaccagccgcctgtgg
ggacgtattgctgcacgcatcgatcctgagtgggtcgaaccggttgcccagcatctgatc
aaacgttcatacagtgaaccgcactgggaacgtgcgcagggcgcggtgatggcaacagaa
aaggttaccgtttacggtttaccgattgttgcagcccgtaaggtgaactacagccagatc
gatcccgcgttgtcgcgtgaactgttcatccgccatgcgctggtggaaggcgactggcaa
acgcgccatgcgtttttccgtgacaatttgaagttacgcgctgaggtagaagagttagag
cacaaatcgcgccgtcgcgacattctggttgatgatgagacgctatttgagttttacgac
caacgcatcagccatgatgtagtctccgcgcgtcactttgacagttggtggaaaaagatc
agccgtgaaacgccggatctgctcaactttgaaaagagcatgctcatcaaagagggcgcg
gaaaaaatcagtaagctggattacccgaacttctggcatcagggcaatctcaaactacgg
ttaagttaccagttcgaacccggggccgatgcggacggtgtgaccgtgcatattccgctc
ccgctactcaatcagatcgaagagagcggttttgaatggcaaattccggggctgcgccgt
gaactggttatcgccctgattaagtctctgccgaaaccggtacgacgcaactttgtgccc
gcgccgaactatgcggaagcgtttttaggccgcgtcacgccgctggaactgccgctgctg
gactcgctggagcgtgaactgcgccgcatgaccggcgtgaccgttgaccgtgaagactgg
cattgggatcaggtgcccgatcacctaaaaatcaccttccgggtagtggatgataagaac
aaaaagctgcaggaaggacgttcgctacaggatctgaaagacgcactgaagggtaaagtg
caggaaacattgtctgcggtggcggatgacggtatcgaacagagcgggttgcacatctgg
agtttcggtcagcttccggagagttacgagcaaaaacgcggtaactataaggtaaaagcc
tggccagcgctggtggatgagcgtgacagcgttgccatcaaactgtttgataacccgctg
gagcaacagcaggcgatgtggtgcggtttacgccgcctgttgttgctgaatattccttca
ccaatcaaatatttgcatgaaaaactgcccaacaaagccaagctggggctgtattttaac
ccgtacggtaaagtgctggatttgattgacgactgtatatcctgtggtgtggatcaactg
atcgacgccaacggtggtccggtgtggaccgaagaaggctttgcggcgctgcatgaaaaa
gtgcgggctgaactgaacgatacggtggtggatattgctaagcaggtcgaacagatcctg
accgcggtgtttaatatcaacaaacgtctgaaagggcgcgtggatatgaccatggcgctg
gggcttgcggatatcaaatcgcagatgggcgggctggtgtaccgtggatttgttaccggc
aatggtttcaagcgtctgggcgatacgctgcgttatttgcaggctatcgaaaagcgtctg
gaaaaactggctatcgacccgcatcgtgaccgtgcgcagatgctgaaagtggatagcgtg
cagcaggcctggcagcagtggttcaataaactgcctcccgcgcgccgtgaagatgacgat
gtcaaagagatccgctggatgatagaagagctgcgcgtcagctattttgcccagcagctt
ggtacgccgtatccgatttccgataaacgtattttgcaggcgatggagcagatttcggga
taa
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