Citrobacter freundii complex sp. CFNIH3: C2U38_20130
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Entry
C2U38_20130 CDS
T06381
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cfq
Citrobacter freundii complex sp. CFNIH3
Brite
KEGG Orthology (KO) [BR:
cfq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfq03009
]
C2U38_20130
Enzymes [BR:
cfq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C2U38_20130
Ribosome biogenesis [BR:
cfq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C2U38_20130
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
MTS
Cons_hypoth95
Methyltransf_ANTKMT
Methyltransf_23
FtsJ
Methyltransf_4
Methyltransf_12
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_15
TPMT
PrmA
CMAS
Motif
Other DBs
NCBI-ProteinID:
AUV27714
LinkDB
All DBs
Position
complement(4023232..4024530)
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPELLPQESAEVVITEDKKQ
FARAQVKRRLNDSPQREVPRCPHFGVCGGCQQQHASISLQQRSKSAALSRLMKCEVSDVI
ADTPWGYRRRARLSLNYRPKEQKLQMGFRKSASSDIIDVKQCPILVPQLEALLPHIRACL
ESLQGLRHLGHVELVQAGSGTLMILRHTAPLSVQDKEKLECFSHSQGLSLFLAPQSEILE
SISEESPWYDSIGLRLTFSPRDFIQVNEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATRAANVVGVEGVPALVEKGRENALNNGLHNVTFFHENLEEDVTRQPWAKNGFDKV
LLDPARAGAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHT
GHLESMVLFERM
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcgtgacgacgcgtcagatcataaccgttacc
gtcaatgaccttgatcctttcggccagggcgttgctcgccataacggaaaggcgttgttt
ataccggaattgctacctcaggaaagcgccgaggtggtgattaccgaagataaaaaacag
ttcgcccgcgcgcaagtaaaacgacgtttaaacgacagtccgcagcgtgaagtgccacgt
tgcccgcattttggcgtgtgcggcggctgccagcagcagcatgccagcatctcgttgcag
cagcgtagcaaaagcgcggcgttgtcgcgtttaatgaaatgtgaagtgtcggatgttata
gctgataccccgtggggctatcgtcgtcgcgccaggttgagcctgaactatcggccaaaa
gaacaaaaattgcagatggggtttcgcaaatccgcatccagcgacattatcgatgttaaa
caatgccctattttggtgccccagcttgaagcgctcttgccccacatccgggcgtgtctg
gaaagtctgcaagggttacgccatcttggtcatgtcgagctggtgcaggcggggagcgga
accctgatgattttgcgccacacggcgccattaagtgttcaggataaggaaaaactggaa
tgcttttcgcattctcaggggctgtctttgtttctggccccgcaaagcgagatactggaa
tcaatatcagaagagtcgccctggtatgactcaattggactacggttaaccttcagcccg
cgtgattttattcaggtcaatgaaggggtaaaccaacaaatggtggcccgtgcgctcgaa
tggctggatgtgcaacctgaagatcgcgttctcgatctgttctgtggaatgggtaatttt
accctgccgttggcaacccgggctgcaaacgtggtgggggtggaaggggtaccggcgctg
gtggaaaaaggccgggaaaacgcgctgaataacggattacacaatgtgacattctttcat
gaaaaccttgaggaagatgttacccggcagccgtgggcgaaaaacggattcgacaaagta
ttgctcgatcctgcgcgtgcgggggctgcaggtgtgatgcaacatattataaaattagaa
cctatacgcgttgtttatgtatcctgtaacccggcaacgctggctcgtgacagcgacgct
ttgctcaacgcgggatatgccatacggcgactggcgatgcttgatatgttcccgcacact
ggacacctggaatcaatggtcctgtttgagcgtatgtaa
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