KEGG   Camelus ferus (Wild Bactrian camel): 102505253
Entry
102505253         CDS       T02979                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cfr  Camelus ferus (Wild Bactrian camel)
Pathway
cfr03013  Nucleocytoplasmic transport
cfr03015  mRNA surveillance pathway
cfr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102505253 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102505253 (DDX39B)
   03015 mRNA surveillance pathway
    102505253 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfr03019]
    102505253 (DDX39B)
   03041 Spliceosome [BR:cfr03041]
    102505253 (DDX39B)
Enzymes [BR:cfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102505253 (DDX39B)
Messenger RNA biogenesis [BR:cfr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102505253 (DDX39B)
Spliceosome [BR:cfr03041]
 Complex C
  Other components
   EJC/TREX
    102505253 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102505253 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 102505253
NCBI-ProteinID: XP_032318536
UniProt: A0A8B8RKS3
LinkDB
Position
20:complement(20583175..20593986)
AA seq 428 aa
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagagaacgatgtggacaatgagctcttagactatgaagacgatgaggtggaaaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccattcacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagttcagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacaactggagccagttactgggcaggtgtctgtactggtgatgtgt
catactcgggagttggctttccagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggta
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaaactctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
atcgccctggcccagcttctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttc
aactacgacatgcctgaagattccgacacctacctgcatcgggtggccagagctggccgg
tttggcaccaagggcttggccattacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag

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