Camelus ferus (Wild Bactrian camel): 102511479
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Entry
102511479 CDS
T02979
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cfr
Camelus ferus (Wild Bactrian camel)
Pathway
cfr03013
Nucleocytoplasmic transport
cfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102511479 (UPF1)
03015 mRNA surveillance pathway
102511479 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfr03019
]
102511479 (UPF1)
Enzymes [BR:
cfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102511479 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102511479 (UPF1)
Messenger RNA biogenesis [BR:
cfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102511479 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102511479 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102511479
NCBI-ProteinID:
XP_032321099
UniProt:
A0A8B8RUZ6
LinkDB
All DBs
Position
22:complement(15771326..15803435)
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AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAVAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacacagggctccgagttcgagtttaccgacttcaccctc
cccagccagacccagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggcgcgggcccgggcgctgtggccggacagctcgatgcgcaggtcggtgggcctgagggc
atcctgcagaacggggctgtggatgacagcgtggccaagaccagccagttgttggctgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggacctccccgtacatgcc
tgcagttactgcggaatacacgatcctgcctgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctacacaaggatgggcccctgggggagacggttctggag
tgttacaattgcggctgccgcaacgtcttcctccttggcttcatccctgccaaggctgac
tcggtggtggtgctgctgtgcaggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcacagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagattccttctgagcaggagcagctgcgggcccggcagatcaccgcgcagcagatc
aacaagctggaggagctctggaaggaaaatccgtctgccaccttggaggacctggagaag
ccaggagtggatgaggagccacagcatgtcctcctgcggtatgaggatgcttaccagtac
cagaacatattcggccctctggtcaagctggaggccgactacgataagaaactaaaggag
tcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcagggggacgagatatgcctgcggtacaaaggggacctggcg
cccttgtggaaagggatcggccacgttatcaaggtccctgataattatggtgatgagatt
gccattgagcttcggagcagtgtgggcgcgcccgtggaggtgactcataacttccaagtg
gattttgtgtggaagtcaacctcattcgacaggatgcagagtgcattgaaaacctttgct
gtggatgagacctccgtgtcgggctacatctaccataagctgctcggccacgaggtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcacaggggctccctgacctc
aaccactctcaggtttatgccgtcaagactgtgctacagagaccactgagcctgatccag
ggaccaccgggcacaggaaagacagtgacctcagccaccatcgtctaccacctggctcgg
caaggcaatgggcctgtgctcgtctgtgctccaagcaacatagctgtggatcagctgact
gagaagatccaccagaccgggctgaaagttgtgcggctctgtgcaaagagccgcgaggct
attgactccccggtgtccttcctggccctgcacaaccagatcagaaacatggacagcatg
ccagagctccagaagctgcagcagctgaaggatgagactggggagctgtcgtccgcagat
gagaagcggtaccgggccctgaagcgcactgctgagagggagctgctcatgaacgctgat
gtcatctgttgcacgtgcgtgggcgcgggggacccgaggcttgccaagatgcagttccgc
tccattttaatcgatgaaagcacccaggccaccgagccagagtgcatggtccccgtggtc
cttggagccaagcagctgatccttgtgggtgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcccagtcactcttcgagcgcctggtggtgctg
ggcatccgtcccatccgcctccaggtccagtatcggatgcaccctgcgctcagtgccttc
ccatccaacatcttctacgagggctctcttcagaacggtgtcactgcagcggatcgtgtg
aagaagggctttgacttccagtggccccaaccagataaaccgatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgttgaaggcaggtgccaagccagaccagatcggc
atcatcacgccctacgagggccagcgctcctacctagtgcagtatatgcagttcagcggc
tccctgcacaccaagctctaccaggaggtggaaatcgccagtgtggatgcgttccagggg
cgtgagaaggacttcatcatcctctcgtgtgtgcgggcgaatgagcaccaaggcattgga
tttttaaacgaccccaggcggcttaatgtggccctgaccagagcgcgatacggggtcatt
attgtgggcaacccaaaggccctgtccaagcagcctctctggaaccacttgctgaactac
tacaaggagcagaaggtgctggtggaggggcccctgaataacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccaggagcccgattcatgaca
acagccatgtatgatgcccgggaggcgattatcccaggatcagtctatgaccggagcagc
cagggccggccctcaaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggccgccatgaacattcccatcccctttaatctagtcatgccaccc
atgccaccgccggggtattttggacaagctaatgggccagctgcaggccggggcaccccg
aaaggcaagactggtcgtggggggcgccagaagaaccgctttgggcttcctgggcccagt
cagacgaatctccctaacagccaggctagccaagacgtggcgtcacagcccttctcacag
ggtgccctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaagtcacagatt
gatgtggcgctgtcacaagactccacataccagggagagcgggcgtaccagcacggcgga
gtgacggggctgtcccagtactag
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