Chlamydia trachomatis F/SW4: FSW4_6261
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Entry
FSW4_6261 CDS
T02165
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cfs
Chlamydia trachomatis F/SW4
Pathway
cfs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FSW4_6261 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfs03021
]
FSW4_6261 (rpoD)
Transcription machinery [BR:
cfs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FSW4_6261 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CCE13788
LinkDB
All DBs
Position
complement(694816..696531)
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AA seq
571 aa
AA seq
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MRMDTLDSQAAEAAQEEEIQRKLEELVTLAKDQGFITYEEINEILPPSFDTPEQIDQVLI
FLAGMDVQVLNQADVERQKERKKEAKELEGLAKRSEGTPDDPVRMYLKEMGTVPLLTREE
EVEISKRIEKAQVQIERIILRFRYSTKEAVSIAQYLINGKERFDKIVSEKEVEDKTHFLN
LLPKLISLLKEEDAYLEERLLALKDPALSKPDQARLNDELEKCRIRTQAYLRCFHCRHNV
TEDFGEVVFKAYDSFLQLEQQINDLKARAERNKFAAAKLAAARRKLHKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEK
FEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEP
TPEELGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYS
MLKDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKM
RHPIRSKQLRAFLDLLEEEKIGSGKIKSYKN
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatggatacgctagatagtcaagctgccgaggcagctcaagaagaagaaatccaa
agaaagttagaagagttagtcactcttgctaaggatcaagggttcatcacgtatgaagaa
atcaatgaaattcttcctccttctttcgatacgccagaacagatcgatcaagttttaatt
tttctggcgggaatggatgttcaagtcctgaaccaagcagatgtagagcgacagaaagaa
agaaaaaaggaagcaaaagagctagaagggttagctaagcgttctgaaggaacgccagat
gatcctgttcgtatgtatttgaaagaaatgggaaccgttcctctacttactagagaggaa
gaggtggaaatttctaagagaatagaaaaagctcaagttcaaatagaaagaattattttg
cgcttccgctattctacaaaggaagctgtgtcgatcgcgcagtatctcatcaatggtaaa
gaacgatttgataagatcgtttctgaaaaggaagtagaagataagacacacttccttaat
cttctgcccaaactcatctctttattgaaagaagaagatgcatatttggaagagcggctt
cttgctttaaaagatccggcgttgtccaagccagatcaggcaaggttgaatgacgagctg
gagaaatgccgtatccgtacacaagcgtatttgcggtgtttccattgtcgtcataatgtg
acggaagatttcggagaggtggtttttaaggcttatgattcattcttacagttagaacag
caaatcaatgatttgaaagcgcgagctgaaagaaataagtttgccgcagcgaaacttgct
gcagcgcggcgaaagcttcacaagcgtgaggtagcggctggacgcactcttgaagagttt
aaaaaagatgtgcggatgttacagcgttggatggacaagagccaggaagccaaaaaagag
atggtggaatccaacttacggttggtaatttctatcgcgaaaaaatataccaacagaggg
ctgtctttcttggatctgattcaagaaggtaatatgggcttgatgaaggctgttgagaag
tttgagtatcgtagaggatacaagttttcaacttatgccacgtggtggattcgtcaggct
gttacacgggctattgcggatcaagcacgaacgatccgcattcctgttcacatgatagaa
accatcaataaagtgcttcgtggagctaaaaaattaatgatggaaacagggaaagagcct
actccggaagagctcggagaggaattgggctttactccagatcgtgttcgagaaatctat
aaaatagctcaacacccgatttctttgcaagcagaggtcggagatggtggggagagctct
tttggagatttcttggaagatactgctgttgaatctccagcggaggcaacagggtattcc
atgttaaaagataaaatgaaagaagttttgaaaacgcttacggaccgtgagcgttttgtt
ttgattcatcggtttggtcttcttgatggtcgtcccaagactttggaagaggtgggttct
gcattcaatgtaacacgagagcggattcgccaaattgaagctaaagctttacgaaagatg
cgtcatcctatccgttccaaacagttgcgagcgttcctagatctattggaagaagaaaaa
attggttcgggtaagattaaaagttataaaaattag
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