Campylobacter fetus subsp. fetus 04/554: CFF04554_0514
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Entry
CFF04554_0514 CDS
T03330
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFF04554_0514 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cft03021
]
CFF04554_0514 (rpoD)
Transcription machinery [BR:
cft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFF04554_0514 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
DUF1374
Sigma70_r4_2
HTH_11
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AIR78455
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Position
complement(522811..524682)
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AA seq
623 aa
AA seq
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MSAAKETFAQIEELFKENSKGYVTFEKLIRLFDKAPTVATIKKVETLAELYKIQLISAVE
AAKIKNIQEAKKSEEDKLKIIDTALEEEFDLTSENDLLEWSRSDSPVRMYLREMGQISLL
TKEEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFDEEESE
EEEEETTEDEFEYDENEEDSATAKKQPKKLDKRAEKVIESFKALEKAKKEWMKIVAKQNI
SIEEEADLVAKLNLTFKKKVLKDKLMDLGPTSKLINEIVKSMETALKSDDDFDKELKRLE
YRLPMFSAELKKNHQGILKDITKLSKEDIISRVPEATMVSTYVEIKKLFQTKEASKTGFN
LEPKELKIVLDQIKRGKNISDDAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGL
MKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQ
EEGKEPDVSIIAREVGLSIDKVKQVIKITKEPISLEAPIGSEDDGKYGDFVEDKTTLSPM
EQILKGDLKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIE
SSAIKKLKHPKVGRKLKNYIEGN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagcaaaagagacttttgcacaaatagaagagttatttaaagagaactcaaaa
ggttatgttacttttgaaaagcttataagattgtttgacaaagctccaacggttgctacc
ataaaaaaagtcgaaactctagccgaactctataaaatacagctgataagtgctgtagaa
gcggcaaagataaaaaatatacaagaagctaaaaaatcagaagaagacaagctaaaaatc
atagataccgccttagaagaggaatttgatctaactagtgagaatgatcttttagaatgg
tcacgatcagacagccctgtgagaatgtatcttagagaaatgggtcaaatttcacttcta
acaaaagaagaagaggtagaaattagtaaaaaaatcgagcttggagaagatatcatcata
gatgctttttgctcagtgccgtatcttattgattttattttagattacaaagagcctctt
ataaatagagaacgccgagttaaagagctttttaaaagttttgacgaggaagagagcgaa
gaagaggaagaagaaacaactgaagatgaatttgaatatgatgagaacgaagaagatagc
gctacagcaaaaaaacagccaaaaaaacttgacaaaagagcagaaaaagtaatagaaagc
tttaaagctcttgaaaaagccaaaaaagaatggatgaaaatagtagcaaaacaaaatata
tctatcgaagaagaagctgatctagtagcaaagttaaatttaacttttaagaaaaaagtt
ttgaaagataaattaatggatcttggacctacaagcaaacttataaatgaaatagtaaaa
tccatggaaacggctttaaaaagcgatgatgactttgataaagagctaaaacgccttgaa
tatcgtcttcctatgtttagtgccgaactcaaaaaaaaccatcaaggcatactaaaagat
ataacaaagctttcaaaagaagatatcatatcaagagttcctgaagcaactatggtatca
acttatgtagagataaaaaagttatttcaaacaaaagaagctagcaaaactggatttaat
ctagaaccaaaagagctaaaaatagtattagatcagataaaacgcggtaaaaatataagt
gacgatgcaaaagctagaatggcaaaatcaaacctaaggctagtagttagtatagctaag
cgatatacaaatcgcggacttccgtttctggatcttattcaagaaggaaatattggtctt
atgaaagcggttgataaatttgaatataaaaaaggttataaattttcaacatatgctaca
tggtggataagacaagctataagtcgcgctatagctgatcaggccagaacgatacgcata
ccgatccatatgatagaaactataaaccgtataaataaaatcaatagaaaatatctacaa
gaagaaggaaaagagccagatgtaagcatcatagcaagagaggtaggtcttagtatagat
aaagttaagcaagttatcaaaattaccaaagaacctataagtcttgaagctccaatcggc
agtgaagatgatggcaaatacggcgattttgtagaagataaaacaactcttagcccaatg
gaacagatactaaaaggcgacttaaaagagcagatagatgaagtattagatcagctaaac
gatcgtgaaaaagcggttataagaatgcgttttggtcttttagaagatgaaagcgataga
acattagaagagataggaaaagaactaaacgtgacaagagagcgtgtcagacagatcgaa
agctcagccataaaaaaactaaaacatccaaaagtaggtagaaaactcaaaaattacata
gagggaaattaa
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