Campylobacter fetus subsp. fetus 04/554: CFF04554_0724
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Entry
CFF04554_0724 CDS
T03330
Name
(GenBank) UvrD/REP family helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03420
Nucleotide excision repair
cft03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFF04554_0724
03430 Mismatch repair
CFF04554_0724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cft03400
]
CFF04554_0724
Enzymes [BR:
cft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFF04554_0724
DNA repair and recombination proteins [BR:
cft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFF04554_0724
MMR (mismatch excision repair)
Other MMR factors
CFF04554_0724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
CarD_TRCF_RID
DUF2340
eIF3_p135
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AIR78638
LinkDB
All DBs
Position
complement(725034..727091)
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AA seq
685 aa
AA seq
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MDNLLDSLNKSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTF
TNKAASTMKHRALSMLNSNISSSPLLCTFHKFGLLFLKFYINELGRKNSFVIIDTDDKKK
IIKEFESSVAASVISNEISKYKNLLLSVEDVISSSKLNAENQFMKTNYEKIAKAYKLYEE
YLAANNLVDFDDLLALTYKILLNNNDLANEISNRYKYIMVDEYQDTNDLQYKLLRKLCEC
HENLVVVGDDDQSIYGWRGAKIENILNFKDQFNNVKLIKLEENYRSTPSILKAANELIDH
NRSRLGKQLFSTKKDEYPIQIIENGDENIEARVIAGQIQKLLGSGVKADEIAILYRVNAL
SRSLEDGLNKARIPYKMVGGVKFYERMEIKDIISYLRLILNPNDDFSLNRIINRPKRGLG
KVSLAKLEKFAYENKTSIYNAIYMIDDDTIGKKLRVVLLDFANELKELSSLAPNNLLANL
EKSFGIKEYYKNLPDGVDRVANIDEFYALIKDQIQNDESFALEEFLNELALESEQDRISD
DAISIMSVHASKGLEFEHLFVIGLEEGFFPLIGDGSDIEEERRLAYVAITRAKSGLNLSF
SNSRFYKGQRARLNKSRFLSETGLCEGSLKLETSNEFKKGDLIKHKIFGIGRVMEITKIK
SEFKLKINFAGNIKEIMSSFVEKVV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggataatctactagactctttaaacaaaagccaaaaagaagcagcctcacatatcgat
ggcgctatgttaatattagcaggagctggaagcggcaaaactaagactattacaactaga
ctagcttacttaatcagcgtagttggcatagacccgttaaatacattaaccctaacattt
acaaataaagcagcaagcactatgaaacaccgcgccttgtctatgttaaactcaaatatc
agctcatctccgcttctttgtacttttcataaattcggtcttttgtttttaaaattttat
ataaatgagctaggtagaaaaaatagctttgtcattatagatacggatgacaaaaaaaag
attataaaagagtttgaaagtagtgttgccgcctcagttatatcaaacgaaatttcaaaa
tacaaaaatctgcttttaagcgtagaagatgttataagtagctcaaaactaaacgcagaa
aatcagtttatgaaaacaaattacgaaaaaatagcaaaagcatacaaactatatgaagag
tatttagccgcaaacaatcttgtggattttgacgatcttttagctcttacatataaaatt
ttactaaataataacgaccttgcaaatgagatttcaaatagatataaatatataatggta
gatgagtatcaagacacaaacgaccttcagtataaactactaagaaaattatgcgagtgt
catgaaaatctagtagtagtaggcgatgatgatcaaagcatatatggctggcgcggtgca
aaaatagaaaatattttaaatttcaaagatcaatttaataacgtgaaattaatcaaactt
gaagaaaactaccgctctactccgtccatcttaaaagctgcaaatgagcttatagatcat
aatcgctcaaggttgggaaagcagctatttagtactaaaaaagacgaatatccgattcaa
atcatagaaaacggcgatgaaaatatagaagcaagagttatagcgggtcaaattcaaaaa
ttattaggatctggtgtcaaagcagatgaaatagcaatattgtatagagtaaatgctttg
tctcgtagccttgaagatggtttaaataaagctagaattccatataaaatggtgggcgga
gttaaattctatgagagaatggagataaaagatataattagctatttaagacttatatta
aatccaaacgatgatttttctttaaaccgcataataaaccgaccaaaaagaggtcttggg
aaagtaagccttgcaaagcttgaaaaatttgcttatgaaaataaaacgtctatttataac
gctatatatatgatagatgatgatacgataggaaaaaaattgagagtcgttttattggat
tttgcaaatgagttaaaagagttaagctcattagctccaaacaatctgctagcaaattta
gaaaaaagttttggtataaaagagtattataaaaatttacccgacggggtagatagagta
gcaaatatagacgagttttatgcgcttataaaagatcaaatacaaaatgatgagagtttt
gctttagaagagtttttgaatgagctagctttagaaagtgagcaagatagaataagcgat
gatgcgatatctattatgagcgtgcatgcgagcaaaggacttgagtttgaacatcttttt
gttatagggcttgaagagggattttttccacttattggcgatggaagcgatatagaagaa
gagagaaggcttgcttatgtagctataactagagcaaaaagcggattaaatctttcattt
tcaaactcaagattttacaaaggtcaaagagcaagactaaataaatcgagattcttaagt
gaaacaggactttgtgaaggttcgcttaaacttgaaactagtaatgagttcaaaaaaggc
gatctcatcaaacataaaatttttggtatcggcagagttatggagataacaaaaataaaa
tctgaatttaaattaaaaatcaacttcgcaggaaatataaaagagataatgtcgagtttc
gtggaaaaagtcgtatga
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