Campylobacter fetus subsp. fetus 04/554: CFF04554_0797
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Entry
CFF04554_0797 CDS
T03330
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF04554_0797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cft03019
]
CFF04554_0797
Enzymes [BR:
cft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFF04554_0797
Messenger RNA biogenesis [BR:
cft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFF04554_0797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SUa-2TM
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIR78711
LinkDB
All DBs
Position
806195..808012
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AA seq
605 aa
AA seq
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MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL
EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA
LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIRDIKQIVKMLPEKR
QNLLFSATYPSEVMSLCNSILKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFG
VESIDQALVFTRTKRSADKCSSYLHTLGFSIAALHGDKSQSVRSKTLEKFKNGKTKILVA
TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE
KLIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDK
KDESKRGRNRDDFKGEFRDRPKKDDKRKFDDKRSKFGFDKDFSTRDGVKSEFSKDKKEFS
KNSRAKDSNSSFDGEAKREFKFKKDDKKFGEKKPFGDKKKSFGDKKSFDDKDKKFSGEKK
FSSDKKPRSSDKSSDEKYSGNKFSPKKKFGSDKPDRGDKFTKDAPKPRASSRPRKPQSDK
KSTTK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagatttcgatctcagctctgctatattagaagcattaaaagagctaaat
tacgacgctcctacgcagatccaacaagtcgcgatacctgctataatgcaaggaaaagat
atcttagcaggagctaggacaggcacgggaaaaactgctgcatttgcgctacctatatta
gaaaaattatcgtcaaaagaacgcaacaaaaagcgtcctcaaactcgtgttttagtgctt
gttcctacaagagaacttgcaaatcaagtcacgcaaaacatcaaatcttacgcgaaaaag
ttaccgtttaaaactttgccagtatttggcggagttagctcttacccacaaattcaagct
ttaaaaagtggtatagatatcgtggtggcgactcctggcagacttttggatcttgctttg
caaaatgctttaagcttagagcatatcgatacgctagtatttgacgaggctgatcgtatg
tttgatatgggatttatccgcgatatcaaacaaatagtaaaaatgcttcctgaaaaaaga
caaaatttactattttccgcgacgtatccaagtgaggttatgtcgctttgtaactctata
ctaaaagatcctttgcgtatccaaatagaagagcaaaacagcactgctttaaatatcata
caacgcgtgattttagtagatcgagataaaaaaatggagcttttaaacgaggtttttgga
gtggagagtatagatcaagctttggtttttactcgtaccaaaagaagtgcggataaatgt
tcatcttatctacatactttaggctttagcatagctgctttgcatggagataaaagtcaa
agcgtgcgttcaaaaacacttgagaaatttaaaaacggtaaaacaaaaattcttgtagca
acggatatagcagcgcgcggattagacataaaagaacttccgtttgttataaatttagag
cttccaaatgtgcctgaggattatgttcataggataggtagaacaggacgcgccggaaat
gatggcgttgcgatatctttggtttgcgttgatgagtttaagtttttaatcgatattgaa
aaattgatcgataaaaaactaataagagaaagctttagcggatttgaagccgatctaaga
gtaaaacctcagcctatcagacgtggacaaaatatgaacaaaagctcagaacgagatgac
agaaacggaaataaaatagataaaaaagagagaaagccaagagagtttaatagcgataaa
aaagacgagtcaaaacgcggtagaaatagagatgattttaagggtgaatttagggacaga
ccaaaaaaagacgataaaagaaaatttgatgataagagatctaaattcggctttgataaa
gactttagcacaagagatggtgtcaagagtgaattttcaaaagacaaaaaggaattttct
aaaaatagtcgcgcaaaagattcaaatagtagttttgatggcgaagcaaaaagagaattc
aaatttaaaaaagacgataaaaaatttggcgagaaaaagccttttggagataaaaagaaa
tctttcggcgataaaaaatcttttgatgacaaagacaaaaaatttagcggcgaaaagaaa
tttagctctgataaaaagcctagaagtagtgacaaaagttctgatgaaaaatattctggt
aataaatttagcccgaaaaagaaatttggaagtgacaaaccagacagaggcgataaattt
actaaagacgctccaaagccaagagcttcaagcagaccacgcaaaccacaatctgataaa
aaatccactacaaaatag
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