Campylobacter fetus subsp. fetus 04/554: CFF04554_1332
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Entry
CFF04554_1332 CDS
T03330
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFF04554_1332 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cft03021
]
CFF04554_1332 (rpoC)
03400 DNA repair and recombination proteins [BR:
cft03400
]
CFF04554_1332 (rpoC)
Enzymes [BR:
cft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFF04554_1332 (rpoC)
Transcription machinery [BR:
cft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFF04554_1332 (rpoC)
DNA repair and recombination proteins [BR:
cft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFF04554_1332 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
Motif
Other DBs
NCBI-ProteinID:
AIR79212
LinkDB
All DBs
Position
complement(1331905..1336431)
Genome browser
AA seq
1508 aa
AA seq
DB search
MSELKPIEIKEDAKPRDFEAFQLRLASPDRIKAWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRYKGIKCEKCGVEVTTSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGIKMKDLERVLYYEAYIVENPGDAFYDNENSKKVDLYDVLNEEQYVLLEQK
FSESGFKARMGGEVIRDLLASLDLVSILDQLKIEIESTNSEAKKKTIVKRLKVVESFLNS
GNRPEWMMITNLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNTRLKRLMELDAPEI
IIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPKLRMDQCGLPKKMALELFKPHLLARLEEKGYATTVKQAKKMIEDKTNEVWE
CLEEVVADHPVMLNRAPTLHKMSIQAFHPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAVTVPSQDMVLGIYYLSLEKNEAVGANKIFASV
DEVMIAVEAHYLDLHAKIKTMVEGRTVFTTAGRLIIKSILPNLKENSVPESMWNKVMKKK
DIANLVDYVYKNGGLEVTAGFLDKLKNLGFRYATKAGISISIADIIIPESKYSYVDEAKK
RVREIQNQYGSGLLTDSERYNKIVDIWTDTNNKVAAEMMKLIKTDKSGFNSIYMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVAQNVKVTMDDCGTHEGVEITEITENGELIESLEERVLGRVLSDDVID
PITNEILFTEGTLIDEVKARTITDAGIKSVSIRTPITCKASKGVCSKCYGINLGEGKLVK
PGEAVGIISAQSIGEPGTQLTLRTFHIGGTASTEQQDRQVVAQKEGFIRYYNLKTYENNN
KFIVTNRRNAAILLVEPKIKAPFDGEINIEVAHEDINVIIKGKSDEVKYVLRKHDLAKPN
ELAGVSGKVEGKFYIPYIKGDKVKENESIVEVIKEGWNVPNRIPFASEVKVADGDPVTQD
ILSGANGVLKFYILKGDYLERIKNVKKGDMVSEKGLFVVIADDDDREAVRHYIPRNSVIK
FNDSDIVSAKDTIAKPQDGSKLVIAEWDPYSTPVIAEEAGTVAYEDIEPGYSVAEQYDEA
TGESRLVINEYLPSGVKPTIVISTKSGKLIRYQLEPKTAIFVKDGAEVSRADTIAKTPKA
VAKSKDITGGLPRVSELFEARRPKNTAIIAEIDGTIKFDKPLRSKERIIIMAEDGSSAEY
LIDKSRQIQVRDGEFVHAGEKLTDGLVSSHDVLRILGEKALHYYLISEIQQVYRSQGVAI
SDKHIEIIVSQMLRQVKIVDSGHTNFIVGDMVSRRKFREENDRIMKIGGEPAIAEPVLLG
VTRAAIGSDSVISAASFQETTKVLTEASIAAKFDYLEDLKENVILGRMIPVGTGLYQDKK
VKIKINED
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttaaaacctattgagataaaagaagatgcaaaaccaagggattttgaagcc
tttcagctaagactcgctagtccagatcgtataaaagcgtggagtcacggtgaagttaaa
aagcctgaaaccattaattatcgcacgttaaaaccggagcgcgacggtctattttgtgct
aagatatttggacctataagggattatgaatgtctgtgcggtaagtataaaaagatgcgc
tataaaggaattaaatgtgaaaagtgcggcgttgaagtaactacttcgaaagttcgtcgc
tcacgcatggggcacattgagcttgttactcctgtagcacatatttggtatgtaaattcg
cttcctagtcgtataggcactcttcttggcataaaaatgaaggatttagaacgtgttctt
tactatgaagcttatatagtagaaaatccgggcgatgcattttatgacaatgaaaatagt
aaaaaagtagatctttatgatgttttaaatgaagagcagtacgtattacttgagcagaaa
tttagtgaaagtggttttaaagctagaatgggcggcgaagttatacgtgatctactcgca
agtttagatttagtatctatacttgatcagttaaagatcgagatagaaagtacaaatagc
gaagcaaagaaaaaaactatagtaaaacgtttaaaagttgttgagagttttttaaattca
ggtaatcgtcctgaatggatgatgataacaaacttgcctgttttaccacctgatttaaga
cctcttgtcagtcttgatggtggtaaatttgcagtttcagatgtaaatgatctgtatcgt
agagttataaatagaaatactcgtttaaaaagactaatggaacttgacgcgccagaaatt
attattcgtaatgaaaaaagaatgcttcaagaagcagttgatgctctgtttgataatggt
aggcgtgcaaatgcagtaaaaggtgcaaataaaagaccgttaaaatctctaagtgaaatt
ataaaaggtaaacagggtcgtttccgtcaaaatctgcttggtaaacgtgtggatttttca
ggacgttcagttatagttgtagggccaaagcttagaatggatcaatgtgggcttcctaaa
aaaatggcacttgagctatttaaacctcatttgttggctcgccttgaagaaaagggatat
gctactactgttaaacaagctaaaaagatgatcgaagataaaacaaatgaagtttgggag
tgccttgaagaggtagttgcagatcatcccgttatgttaaaccgtgctcctactttacat
aaaatgtctattcaggcgtttcatccggttttaatagaaggtaaagctattcagcttcat
cctcttgtttgttcggcgttcaatgcagactttgatggcgaccaaatggctgtgcatgta
ccactttctcaagaggctattgcagagtgtaaaattcttatgttaagttcgatgaatatc
ttacttcctgcgagcggaaaagctgtaacggtaccttctcaagatatggttttgggaatt
tattatttaagtcttgaaaaaaatgaagccgttggagctaataaaatttttgctagtgtc
gatgaggtaatgatagctgttgaagctcactatcttgacttgcacgcaaagataaaaact
atggtagaaggacgcactgtatttacaactgcgggtcgtcttattataaaatcaatactg
ccaaatttaaaagaaaactctgttccagaatctatgtggaataaagttatgaagaaaaag
gatattgctaatttggttgattatgtttataaaaatggcggtcttgaagtaacagccgga
tttttagataagcttaaaaatctaggatttagatacgctacaaaagcagggataagtata
tctatagctgatattatcatacctgagagtaaatatagttatgtagatgaagcaaagaaa
agagttagagaaattcaaaatcaatacggctcaggtttactaactgattcagaaagatac
aacaaaatagttgatatctggacagatactaacaataaagttgcagctgaaatgatgaaa
cttatcaaaacagataaaagtggatttaactctatttatatgatggcagactcgggagca
aggggaagtgcagctcaaattcgtcagcttgctggtatgcgtggacttatggcaaaacct
gatggttcgatcattgagactcctatcacatcaaatttccgtgagggactaaacgtgctc
gagtatttcatctcaactcacggtgctagaaaaggtcttgcagatactgcacttaaaacc
gcaaatgccggatatcttacaagaaagcttatcgatgttgctcaaaacgtaaaagttact
atggatgattgcggtactcacgaaggtgttgagataacagagattactgaaaacggagag
cttatcgaaagcttagaagaaagagtattaggtagagttttaagtgatgacgtaattgat
cctattactaatgaaatcttatttaccgaaggtactcttatagatgaagtaaaagctaga
actatcactgacgctggtataaaatcagtaagcataagaactcctataacttgtaaagca
agtaagggcgtatgctcaaaatgttatggtataaaccttggcgagggtaaactggtaaaa
ccaggagaggccgtgggcatcatctcagctcaatcaatcggcgaacctggtactcagctt
actctaagaacattccacattggcggtactgcttcaacggagcaacaagatcgtcaagta
gtggctcaaaaagagggatttattagatattataatcttaaaacatatgagaataacaat
aaatttatagtaacaaatcgtcgtaatgcagctatattattagttgagccgaagataaaa
gctccgtttgacggagagataaatatagaagtggcacacgaagatataaatgttattata
aaaggcaaaagcgatgaggttaagtatgttttaagaaaacacgatttagccaaaccgaat
gagttagccggagtaagcggtaaagttgaaggtaagttctacataccttatataaaaggt
gataaagtcaaggaaaacgagagtatagtcgaggttataaaagagggttggaatgtgcca
aaccgtattccttttgctagtgaagtaaaagtagctgatggcgatcctgttactcaagat
atattatctggagcaaacggcgtacttaagttttatatattaaaaggtgactatctagag
agaattaaaaacgtcaaaaaaggtgatatggttagtgaaaaaggattatttgttgttatc
gccgatgatgacgatagagaagctgttcgtcactatataccaagaaatagtgttattaaa
tttaatgatagcgatatagtaagcgcaaaagatactatagcaaaaccgcaagatggcagt
aaacttgtaattgccgagtgggatccgtactcaactcctgttatagcagaagaagccggt
acagtcgcttatgaagatatagagcctggatatagcgtagccgagcagtatgatgaagca
accggagaaagtaggcttgttataaacgaatatctaccaagcggagttaagccaactata
gttatatcaactaaaagcggaaaacttattcgttatcagttggagcctaagactgctata
tttgtaaaagatggagcagaggtttctagagccgatactatagctaaaactccaaaagca
gttgcaaaatcaaaagatatcacaggaggtcttcctagggtttcagaattgtttgaagca
aggcgtcctaaaaatacagctattattgcagagattgatggtactatcaaatttgataaa
cctcttcgctcaaaagaacgtataataataatggctgaagatggctcaagcgcagagtat
cttatagataaatctcgccaaattcaagtaagagatggtgagtttgtgcatgctggagaa
aaattaaccgacggtttagttagcagccatgacgtattaaggatattaggtgaaaaagca
ttgcactattacttgataagtgaaattcaacaagtttatcgctcacaaggcgttgctata
agtgataaacatatagagattatcgtatctcaaatgctgcgtcaagtaaaaatagtagat
agcggtcacacaaattttatcgtaggcgatatggtaagtagacgtaaatttagagaagaa
aatgatcgtataatgaaaataggtggcgagccagcaattgccgagccagtacttcttggt
gtaacaagagctgctataggaagtgatagtgttatctcagcagcttctttccaagagact
acaaaggttttaacagaagcaagtatcgctgctaaattcgactatcttgaagatctaaaa
gagaacgttattttaggtcgtatgataccagttggtaccggtctttatcaagataaaaaa
gttaagattaaaataaacgaagattaa
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integrated database retrieval system
