Campylobacter fetus subsp. fetus 04/554: CFF04554_1333
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Entry
CFF04554_1333 CDS
T03330
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFF04554_1333 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cft03021
]
CFF04554_1333 (rpoB)
03400 DNA repair and recombination proteins [BR:
cft03400
]
CFF04554_1333 (rpoB)
Enzymes [BR:
cft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFF04554_1333 (rpoB)
Transcription machinery [BR:
cft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFF04554_1333 (rpoB)
DNA repair and recombination proteins [BR:
cft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFF04554_1333 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AIR79213
LinkDB
All DBs
Position
complement(1336424..1340563)
Genome browser
AA seq
1379 aa
AA seq
DB search
MLNSLYSGNRLRVDFSNVAKEIDVPNLLQLQKKSFDHFLNLDNSQTESGIEKVFKSIFPI
HDPQNRLTLEYVSSEISKPRYTVRECMERGLTYCVNLKIKIRLIVHDRDEKTNEKVGVKD
IKEQEIFVREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESPTVVNKLIYTAQII
PDRGSWLYFEYDTKDVLYVRINKRRKVPITILFRALGYKKQDIVKLFYPIQTLNIKNNKF
LTMFNPDDFSGRVDYDIKDEDGNILHQAGKRLTKKKADKLIEDGLKFVEYPIEVLVNRYL
ASPVIDKESGEVIYDTLTQLDENKLAKIVAEQNSIEIANDLASGVDDAIINSFLQDYETL
KLLKQTEGLEDENDLAAIRIYKVMRPGEPVVKEAARTFVNDLFFNPEKYDLTKVGRMKMN
HKLGLSVPEYVTVLTNEDIIKTAKYLIKVKNGQGYIDDRDHLGNRRIRSIGELLANELHL
GFVKMQKAIRDKFTSLSNNVDELMPYDLVNPKMITTTIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVNDL
GFVESPYRRVIDGKVTNEIVYLTATQEEGHIIAPASTVLDANDIIKEDLIEVRRDGEMLL
AKREDVTLIDLCSGMVMGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRSTAPIVGTGM
EAIVARDAWEAIKAKRGGVIEKVDNRNIFILGEDENGPYIDQYTMEKNLRTNQNTTFSQH
PIVKKGDMVKSGQIIADGSSMEKGELAIGKNALIAFMPWNGYNYEDAIVMSERMIRADAF
TSVHIYEKEIEARELKDGVEEITRDIPNMKEEDLMHLDESGIVKIGTHIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYAGASLEGVVIDVKIFTKKGYEKDARSFKA
YEDEKNILEKEHHDRLLMLDREEMLRVTALLSKNPLESELEIGKNSYKKGDKIKRSDLDN
VNRFTLNTYVKCFSKEIQKTYEDMKAYFQNEKKKLKDEHDAKLEILEKDDILPSGVVKLV
KVYLATKRKLKVGDKMAGRHGNKGIVSNIVPDVDMPYLPNGRTVDIVLNPLGVPSRMNIG
QILESHLGLVGMKLGEQIEEIFENKKAEWIKELRAKMTEIADVSRLMDAKAILSKIDDDK
LIDYARDWASGVRFATPIFEGVKADEFKKLFEMAKIDMDGKTELYDGRTGSKMAERVNVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALSGGQRFGEMEVWALEAYGAAHTLR
EMLTVKSDDVEGRLAAYKALTRGENVPSTGIPETFFVLTNELKSLALDVEIYDEEENNE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatagcctatattctggaaatcgtctcagagttgatttttcaaatgttgcaaaa
gagattgatgttccaaatttattacaattgcaaaaaaagagttttgatcattttttaaat
cttgataattcacaaaccgaaagcggaattgaaaaagtatttaagtcgatattcccaata
catgatcctcaaaatagacttacattagagtatgtcagcagcgaaataagtaagccaaga
tatacagttagagagtgtatggaaagaggacttacgtattgcgtaaatttaaaaattaaa
attagactgattgtacatgacagagatgaaaaaacaaatgaaaaagtcggtgtcaaagat
ataaaagaacaagaaatttttgtacgtgaaattcctcttatgactgatagaatttcattt
ataataaacggcgtagaaagagtcgtagtaaatcagcttcatagaagcccaggtgttata
tttaaagaagaagagagtccaactgtagtaaataaactaatatatacagcacaaattata
ccagatcgcggtagctggctctatttcgaatatgacacaaaagatgttttatatgtgcgt
ataaataaaagaagaaaagttcctataacgattctttttagagcgcttggatataaaaaa
caagatatagtaaagttattttaccctatccaaacattaaatataaaaaataataaattt
ttaaccatgtttaatccggatgatttttctggaagagttgattatgatataaaagatgaa
gatggaaatattttacatcaagcaggaaagagacttacaaagaaaaaagcagataagctt
attgaagatggactcaaatttgtagagtacccgatagaagttttggtaaatagatatttg
gctagtccagttatcgataaagagagcggcgaagttatttatgatactttaactcagcta
gatgaaaataaattagcaaaaatagtagctgaacaaaatagtatagaaatagcaaatgat
cttgcaagcggtgttgatgatgctattattaactcatttttacaagattatgaaacgcta
aaattacttaagcagactgaaggcttagaagatgaaaatgacctggctgctattagaatt
tataaagttatgcgcccaggagaacctgtagttaaagaagctgcaagaacgtttgtaaat
gatctattttttaacccagaaaaatatgatcttacaaaagtaggtcgtatgaaaatgaat
cataaattaggtcttagcgttcctgagtatgttactgtacttacaaatgaagatattata
aaaactgctaaatatctgataaaagtaaaaaacggacaaggttatatagatgatagagat
cacttaggtaaccgtcgtatcagatcaataggcgagcttttagcaaatgagcttcatttg
ggatttgtgaaaatgcaaaaagctattagagataaatttacaagtcttagtaataacgta
gatgagcttatgccttatgatctagtaaatcctaaaatgataactacgactattatggaa
ttttttacaggcggtcagctcagccaatttatggatcaaacaaatcctcttagcgaagtt
acgcataaacgtcgtttgtcggctcttggcgaaggcggtttagtaaaagagcgtgccgga
tttgaagtacgtgacgtgcatccgactcattatggtagaatttgccctgttgagactcca
gaaggtcaaaatatcggtcttatcaacactctttctacatatgcaaaagtaaatgatcta
ggatttgttgaatcaccttatagaagagtaatagacggtaaagtcacaaatgagattgtt
tatttaacagctactcaagaagagggtcatattatagctccagcttcaactgtattagat
gcaaacgatattataaaagaagatcttatagaagtaaggcgagatggagaaatgcttctt
gcaaaaagagaagacgtaacattgatagatctttgtagtggtatggttatgggtgttgcc
gcttctttgataccgtttttagagcatgatgatgcaaaccgtgcacttatgggttcaaac
atgcagcgtcaagcagttcctcttcttagatctacagcacctatagtaggaaccggtatg
gaagctatagttgcaagagacgcgtgggaggctataaaagctaaacgtggtggcgttata
gaaaaagttgataatagaaacatatttattcttggtgaagatgaaaacggtccatatatt
gatcaatatactatggaaaaaaatttaagaactaaccaaaatacaacttttagccaacat
cctatagttaaaaaaggcgatatggtaaaatcaggacagataatagctgatggctcgagt
atggaaaagggcgagttagccataggtaaaaatgctcttatagcatttatgccttggaat
ggttataattatgaagatgctattgttatgagtgagagaatgatacgcgcagacgcattt
actagcgttcatatatatgaaaaagagatagaagcaagagagctaaaagacggtgtagaa
gagataactagagatattccaaatatgaaagaagaagatcttatgcacctagatgagagc
ggtatagtaaaaataggcactcatatcaaaccaggaatgattttggtgggtaaagtttca
ccaaaaggagaggtaaagccgactcccgaagagagacttcttagagcaatatttggtgaa
aaagcaggtcacgttgtaaataaatctttgtatgccggagctagtcttgaaggtgtggtt
atagatgttaagatatttacaaaaaaaggctatgaaaaagacgctagatcatttaaagca
tatgaggatgaaaagaatattttagaaaaagaacatcatgacagacttttaatgcttgat
cgtgaagagatgttaagagttactgctttattatctaaaaatcctcttgagagtgagcta
gagatcggtaaaaatagctataaaaaaggtgataagataaaaagatcagatcttgataat
gtaaatagatttactcttaacacctatgtaaagtgcttttcaaaagaaattcaaaaaaca
tatgaagatatgaaagcttattttcaaaatgagaagaagaaattaaaagacgagcatgac
gctaaacttgaaattttagaaaaagatgatatattgccaagcggcgtagttaagttagtt
aaagtatatttagctacaaaaagaaaattaaaagtaggcgataagatggcaggacgtcat
ggaaataaaggtattgtatcaaatatagttccggatgttgatatgccgtatcttccaaat
ggacgtacggtagatatagttttaaatccattaggcgttccaagtcgtatgaatataggt
caaattttagaaagccacctaggtttagttggtatgaaattaggagagcagattgaagaa
atctttgaaaataaaaaagccgaatggataaaagagctaagagcaaaaatgactgagata
gcagatgtatctcgtcttatggatgctaaagctattttaagcaaaattgatgatgataag
ctcatagattatgctagggactgggctagcggggttagatttgctactcctatttttgaa
ggtgttaaagctgatgaatttaaaaagttatttgagatggcaaaaatagatatggatggt
aaaaccgaactttatgacggacgtaccggatcaaagatggctgagcgtgttaatgttgga
tgtatgtatatgttaaaacttcaccacttagttgatgaaaaagttcatgcaagaagtacc
ggaccatactctttagtaacacaacaaccagttggtggtaaagctctaagcggtggtcaa
agatttggagaaatggaagtttgggcacttgaggcttatggcgcggctcatactttaaga
gaaatgctgactgtaaaatctgatgacgtagagggtcgtttagctgcttataaagcactt
actagaggagaaaatgtaccaagtactggtattccagaaacgttttttgttttaacaaat
gagctaaaatctctagcacttgatgttgagatctatgatgaggaagagaataatgagtga
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integrated database retrieval system
