Collimonas fungivorans: CFU_0393
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Entry
CFU_0393 CDS
T01583
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFU_0393 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfu03021
]
CFU_0393 (rpoB)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_0393 (rpoB)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFU_0393 (rpoB)
Transcription machinery [BR:
cfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFU_0393 (rpoB)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFU_0393 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AEK60231
UniProt:
G0AEU6
LinkDB
All DBs
Position
491459..495565
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHHVPFLLATQLESYLGFLQADKVPSQRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPPFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMSVEQILANFFVFDNFALRNE
GAEMEFVAERLRGEVARFDITDKSGKVLVAKDKRINSKHVRDVEAAGIKQISVPEDYLLG
RVLARNIVDGDTGEVVANANDELTEELLAKLREADISDIQTLYTNDLDQGSYISQTLRSD
DTNDQMAARVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EDSKVTDQIDYLSAIEEGRYIIAQANATIDKSLKLSDELVSAREAGETILVSPERVQYMD
VAPGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT
TVQALRGGIVDYVDAGRVVIRVNDEEATAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG
DRVAKHDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELQ
RYRLDLNDQLRIVEGDAFERLERMLIGKVVNGGPKKLAKGSKLTKEYLADLDKYHWFDIR
PADDDAAVALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNIGQVLEVHLGWAA
KGLGLRIGEMLKAQTKIAELRKFLTTIYNESGKSEDLDSLTDDEILHLASNLKAGVPFAT
PVFDGAHEDEIRRMLDLAYPDAIAKQLGMTPSKNQVTMYDGRTGEAFERSVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLLKEIRSLGIDMDLDRE
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaagcgtattcgtaaatcttttgcgaaacgcgctaac
gttcaccacgttccgttcctgctggcgacccagctcgagtcgtatcttggctttttgcaa
gcagacaaagtaccgtctcaacgtaagaacgagggcctgcaatcggctttcacttctatt
ttccctatcgtttcgcacaatggttttgcgcgtctcgagttcttgtcctacgtgctcggc
gatccgccgttcgacgtcaaggaatgccaacagcgcggattgacgttcgcgtcgccgttg
cgcgccaaggtgcgcctggtgatcctggacaaggaatcgccgaccaagcctgtggtcaag
gaaatgaaggaacaggaagtctacatgggcgaattgccgctcatgacgactaccggttcg
ttcgtgatcaacggcaccgagcgcgttatcgtgtcgcagctgcatcgttcgccaggcgtg
ttctttgaacatgaccgcggcaagacgcactcgtccggcaaactgctgttctcggcacgt
atcattccttaccgcggttcctggctcgacttcgagttcgacccgaaagacatcctgttc
ttccgcgtcgaccgtcgccgcaagatgcctgtcacgatcctgctgaaagcgatcggcatg
tcggtcgagcagatcctggccaacttcttcgtgttcgacaactttgcgttgcgcaacgaa
ggcgccgagatggaattcgtcgcagaacgcctgcgcggcgaagtcgcacgtttcgacatc
accgacaaatcgggcaaggtcctggtcgctaaagacaagcgcatcaactccaagcacgtg
cgcgacgttgaagctgccggcatcaaacagatctcggtaccggaagactacctgctgggc
cgcgtcttggcgcgcaacatcgttgacggcgacaccggcgaagtagtggccaacgccaac
gacgagctgactgaagaattgctggccaagctgcgtgaagctgacatcagcgacatccag
accctgtacaccaacgacctggaccaaggtagctacatttcgcagaccctgcgcagcgat
gacaccaacgaccagatggccgctcgtgtcgcgatctaccgcatgatgcgtcctggcgaa
ccgccaaccgaagattcggtcgaagcgctgttcaacggcctgttctacaacgctgatcgt
tacgatctgtcggctgtcggccgcatgaagttcaaccgccgcatcggccgcgatgaactg
actggcgccatgacgctgtcgaacgaagacgtgctggctgtgatcaagatcctggttgaa
ttgcgtaacggccgcggcgaagtggacgatatcgatcacttgggcaaccgccgcgtgcgt
tgcgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgggttgagcgcgca
gtcaaggaacgcctcggccaagccgaagcggacaacctgatgccgcatgacctgatcaat
tccaagccgatctcggctgccatccgtgagttcttcggttcgtcgcagttgtcgcagttt
atggaccagaccaacccgctgtcggaaatcacccacaagcgccgtgtatcggcacttgga
cctggcggtctgacccgcgagcgcgctggctttgaagtgcgcgacgtgcatccgacccac
tatggccgcgtgtgcccgatcgaaacaccggaaggcccgaacatcggcctgatcaactcg
ctggccttgtatgctcgcctgaacgaatacggtttcctcgagaccccgtaccgcaaggtt
gaagacagcaaggttaccgaccagatcgattatctgtcggcgattgaagaaggccgctac
atcatcgcccaggcgaatgcgaccatcgacaagtccctgaagctgtccgatgaactggta
tccgcacgtgaagccggcgaaaccatcctggtatcgccagagcgcgtgcagtacatggac
gtggctccaggccaggtggtgtctgttgcggcatcgctgatcccgttcctcgaacacgat
gatgcgaaccgcgcattgatgggcgccaacatgcaacgtcaggctgttccttgcctgcgc
ccagagaaggccttggtcggtaccggtatcgaacgcaccgtggcagttgactcgggtact
accgtgcaggcactgcgtggcggtatcgttgactacgtcgatgcgggtcgtgtggttatt
cgcgtgaacgacgaagaagcgacagcgggcgaagtcggtgtcgatatctacaacctgatc
aagtacacacgttccaaccagaacaccaacatcaaccaacggccaatcgtgcaagttggc
gaccgcgtcgccaagcacgacgtgatcgccgatggcgcatcgaccgatctgggcgaactg
gccctgggccagaacatgctggtggcgttcatgccgtggaacggctacaacttcgaagat
tcgatcctgatctccgaaaaagtggtggctgacgatcgctacacgtcgattcatatcgaa
gagttgtcggtggttgcacgcgacaccaagctgggcgctgaagaaatcacccgtgacatc
tccaacctggccgaaaaccagctggcgcgtctggatgaatccggcatcgtctacatcggc
gctgaagtcgaagccggcgatacgctggtcggtaaggtgacgcctaagggtgaaacccag
ctgacgccagaagaaaagctgctgcgcgcgatcttcggtgaaaaagcttcggacgttaaa
gatacatcgctgcgcgtgccttcgggcatggtcggcactgtcatcgacgttcaggtgttt
acacgcgaaggcatccagcgcgacaagcgcgcacagcagatcatcgacgatgaactgcag
cgctatcgcctggacctgaacgaccagttgcgtatcgttgaaggcgatgccttcgaacgt
ctggaacgcatgttgatcggcaaggttgtcaacggcggtcctaagaagctggccaagggc
agcaagctgaccaaggaatacctggcagacctggacaaataccactggttcgatatccgc
cctgcggacgacgatgcagcggtagcgctggaagcgatcaaggaatcgatcgccgagaag
cgtcaccagttcgacctggcgttcgaagaaaagcgcaagaagctgacccaaggcgacgag
ctgcagcctggcgtgcaaaagatggtcaaggtttacctggctgtcaaacgccgcctgcaa
cctggcgacaagatggccggccgtcacggtaacaagggtgtggtttcgcgcatcctgccg
atcgaagacatgccgcacatggccgacggtacaccggcagacatcgtgctgaacccgctg
ggcgttccttcgcggatgaacatcggtcaggttctggaagtccatctgggctgggcagcc
aagggtctgggcctgcgcatcggcgaaatgctgaaggcgcaaaccaagatcgcggaactg
cgcaagttcctgacgactatctacaacgaatccggtaaatcggaagacctggatagcctg
acggacgacgagatcctgcatctggccagcaacctgaaagccggcgtgccgttcgcgacg
ccagtgttcgacggtgcgcatgaagatgaaatccgccgcatgctggatctggcctatccg
gacgccatcgccaagcagctgggcatgacgccttcgaagaaccaggtcacgatgtatgac
ggccgtaccggcgaagctttcgagcgcagcgttactgtcggctacatgcattacctgaaa
ctgcaccatctggtcgatgacaagatgcatgcacgttctaccggtccttactcgctggtt
acacagcagcctctgggcggtaaagcacagttcggcggccagcgtttcggtgagatggaa
gtttgggcattggaagcctacggcgcatcgtacgtgctgcaggaaatgctgacagtgaag
tcggatgacgtgaacggccgtaccaaggtgtatgaaaacctggtcaagggtgaccatgtg
atcgatgcaggcatgccggaatccttcaacgtgctgttgaaggaaatccgctcattgggc
atcgatatggacctcgaccgcgagtaa
DBGET
integrated database retrieval system
