Collimonas fungivorans: CFU_0462
Help
Entry
CFU_0462 CDS
T01583
Symbol
rpoN
Name
(GenBank) sigma N (sigma 54) factor of RNA polymerase
KO
K03092
RNA polymerase sigma-54 factor
Organism
cfu
Collimonas fungivorans
Pathway
cfu02020
Two-component system
cfu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFU_0462 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFU_0462 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfu03021
]
CFU_0462 (rpoN)
Transcription machinery [BR:
cfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFU_0462 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Xre-like-HTH
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AEK60299
UniProt:
G0AGG9
LinkDB
All DBs
Position
complement(559389..560870)
Genome browser
AA seq
493 aa
AA seq
DB search
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERVDDPLDNSVRL
LADGAISGATSTMDAPVGDSEVSSSPSESEAGLDTPPAAENGPENGDSEWSFDDVARSSK
TPDDEDARPQLEAHECTLREHLLQQMRETLNDIRDRALVELTIDALDDNGYLEESLEEIL
ERLPPELEIAIEELSTALKMVQSFDPAGVGARNAAECLGLQIKRFIKVPFVTRRLALAIV
QDHLMLFAQRDFNKIKKALDCDDEDLREAQAVIKQCNPHPGAPFAANASDYVVPDVIVRR
SKQGWQVMLNNDVMPRLRVNVLYANILKQSKGDGALTSQLQEAKWLIKNMRQRFDTILRV
AQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFF
GSHVATEAGGEASSTAIRALIKQLIGAEDTKNPFSDSKIADMLAEQGMVVARRTVAKYRE
ALKIPSVNLRKAL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatcactccagctacgcacctcgcagcatcttgcgctgacgccccagttgcag
cagtcgatccggctgctgcaattgtctacgctcgaactgcaccaggagctggaacagatc
ctgtccgacaatccgctgctggaacgggtcgacgatccgctcgataactccgtgcgcctg
ctggcggacggcgccatcagcggcgccacctcaaccatggacgcgccggtgggcgacagc
gaagtgagcagctcgccgagcgaaagcgaagccgggctggacacgcctccggccgccgaa
aacggcccggaaaacggcgacagcgaatggagtttcgacgatgtcgcgcgcagctcgaag
acgccggacgacgaagatgcgcggccgcagctggaagcccacgaatgcacgctgcgcgaa
cacctgctgcagcagatgcgcgagacgctgaacgacatacgcgaccgggcgctggtcgag
ctgaccatcgatgcgctggacgacaacggctacctggaagaatcgctggaagagatcctc
gagcgcctgccgccggaactggaaatcgccatcgaagagctgtcaaccgcgctgaaaatg
gtgcagagtttcgacccggccggcgtcggcgcccgcaatgcggcggaatgcctgggcttg
cagatcaagcgttttatcaaagtgccgtttgtcacgcgccgcctggcgttggcgatcgta
caagaccacctgatgctttttgcgcaacgcgatttcaacaagatcaagaaggcgctcgac
tgcgacgacgaggacctgcgtgaggcgcaggccgtcatcaagcagtgcaatccgcatccg
ggcgcgccgttcgccgccaacgcttccgattatgtggtgccggacgtgatcgtcaggcgc
agcaagcagggttggcaggtaatgctgaacaacgacgtcatgccaaggctcagggtaaat
gtcctgtatgccaacattctcaagcaaagcaagggcgacggcgccctcacttcgcagctg
caggaagccaagtggctgatcaagaatatgcggcagcgattcgacaccatcctgcgcgtg
gcgcaggcgatcgtcgagcgccagaggaatttcttttcgcacggggcggtcgccatgcgg
ccgcttgtgttgcgtgaaatagctgatacactgggactacacgagagtactatttctcgt
gtaaccactcagaaatacatgctcactccccacgggatgtttgaactgaagtatttcttc
ggcagccatgttgctactgaggcaggtggagaggcttcctcaacggcaatcagggcactc
attaagcaattgataggagcggaagatacaaaaaatcctttctctgacagcaagattgcc
gacatgcttgcggaacaaggtatggtggtcgcccgccgcaccgtcgcaaaatatcgcgaa
gcactgaaaattccgtcagttaatttacgcaaagccttgtag
DBGET
integrated database retrieval system
