Collimonas fungivorans: CFU_0844
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Entry
CFU_0844 CDS
T01583
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_0844 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_0844 (recQ)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_0844 (recQ)
Enzymes [BR:
cfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFU_0844 (recQ)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFU_0844 (recQ)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFU_0844 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
COX2
Motif
Other DBs
NCBI-ProteinID:
AEK60678
UniProt:
G0AI95
LinkDB
All DBs
Position
996265..998109
Genome browser
AA seq
614 aa
AA seq
DB search
MSHSPHPDVSAGSDPQALHILQTVFGYPSFRGQQAEIVSHVANGGDALVLMPTGGGKSLC
YQIPALLRDGVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTYEEASQIERRVRSGDL
DLVYVAPERLLTPRCLDLLESSKIALFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVP
RIALTATADQQTREEIALRLQLEQGARFVSSFDRPNIRYQIVEKANGRKQLLDFIQSEHA
GDAGIVYCLSRKKVEETAEFLEQQGIQALPYHAGMDYAQRTRNQGRFLREDGIVMVATIA
FGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGGPANAWMAYGLQDVVQQRRMIDES
EAGEVFKRVLGVKLDAMLGLCETLHCRRVRLLDYFGQGSERCGNCDTCMSPPVSFDATVV
VQKLLSTIYRVDQRFGAMHVMDVLRGIDSDKIKQWRHDQLSTFGIGSDRSEAEWRAILRQ
SIALGLITVDHEAYSALKLTDAARPVLRGEQPVQLRQYQKPVKQKRSGSKPKGYVETDLS
TLEQAIFEKLRWWRVETARKHNVPAYVIFHDATMREIAKAQPASLGDLRGVSGVGEKKLE
TYGAEIVELIAEFT
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcacactcgccacatccagacgtatccgccggttccgacccgcaagcactccacata
ctgcaaacggtattcggttatccctctttccgtggccagcaggctgagattgtcagccac
gtagccaacggcggcgatgcgctggtattgatgccgaccggcggcggcaaatcgctgtgc
taccagatcccggccttgctgcgggatggcgtcggcgtggtggtgtcgccgctgatcgcg
ctgatgcaggaccaggtcgatgcgctggccgaagtcggcgtgcgcgctgccttcctgaat
tcaacgcagacctacgaagaagcgtcgcagatcgaacgccgcgtgcgcagcggcgatctc
gacctggtgtatgtggcgccggagcgcctgctgacgccgcgttgcctggacttgctggaa
tcgtccaagatcgccctgttcgcgatcgacgaggcgcactgcgtttcacaatggggccat
gatttccggcccgaatacatcaagctgtcgatcttgcacgagcgtttcccgcaagtgccg
cggattgcgctgacggcgaccgccgaccagcagacccgcgaggaaatcgcgctgcgtctg
cagctggagcagggcgcgcgtttcgtttcctcttttgaccgccccaatatccgctaccag
attgtcgagaaggccaacggtcgcaagcagctgctcgacttcatccagagcgagcacgcg
ggcgacgccggcatcgtgtattgcttgtcgcgcaagaaggttgaagagaccgccgaattc
ctggagcagcaggggatccaggccttgccttaccacgccggcatggactatgcgcagcgg
accaggaaccagggccgtttcctgcgcgaagacggcatcgtgatggtggctaccatcgct
ttcggcatgggaatcgacaagccggacgtgcgttttgtcgcccacttggacctgccgaaa
agcatagagggctattaccaggaaaccggccgtgcaggccgcgacggcgggcccgccaat
gcctggatggcgtatggcttgcaggacgtggtgcagcagcgacgcatgatcgacgaatcg
gaagccggcgaagtcttcaagcgggtgctgggcgtcaagctcgatgcgatgctcggcctg
tgcgaaaccttgcattgccggcgtgtgcgtttgctggactatttcggccagggttcggag
cgttgcggcaattgcgatacctgcatgagcccgccggtgtcgttcgacgccacggtggtg
gtgcaaaagctgctatcgacgatctaccgggtcgaccagcgtttcggcgcgatgcatgtg
atggatgtcctgcgcggcatcgattccgacaagatcaagcaatggcgccacgatcagctt
tccacctttggcatcggcagcgatcgcagcgaagcggaatggcgggccatcttgcggcag
tcgattgcgttgggcttgatcacggtcgaccatgaagcgtacagcgcgctcaagctgacc
gacgccgcacgcccggtgctgcgcggcgaacagccggtgcagttgcggcagtaccagaaa
ccggtcaagcagaaacgcagcggcagcaagcccaagggttatgtcgaaaccgacctgtcg
acgctggagcaggcgattttcgagaagctgcgctggtggcgggtcgagactgcgcgcaag
cacaacgtaccggcttacgtcatcttccacgacgccaccatgcgcgaaatcgccaaggcg
caaccggcgtcactgggcgatctacgcggcgtcagcggcgttggcgagaagaagctggag
acctacggcgctgaaattgtcgagctgattgccgaattcacctga
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