Collimonas fungivorans: CFU_0873
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Entry
CFU_0873 CDS
T01583
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_0873 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfu03021
]
CFU_0873 (rho)
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_0873 (rho)
Transcription machinery [BR:
cfu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CFU_0873 (rho)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFU_0873 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
FtsK_SpoIIIE
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEK60706
UniProt:
G0AIC3
LinkDB
All DBs
Position
complement(1032439..1033701)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEASKHRILFENLTPLHPNKPLPLERDMRGEENITGRIIDMIAPIGKGQRGLLVASP
KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPDQLQKIWVLRKLLYSMDEIEAMEFILDKMKSTKNNAEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatctgaattaaaggcgttacatgtctccgccctgctagaaatggcaatcggc
ctcgacatcgataacgcagcgcgtttgcgcaaacaagaactgatgttcgcgatcctgaaa
aagcgcgcgaaatcaggagaacagattttcggcgacggcgccctcgaagtcctgcctgac
ggctttggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatttat
atctcgccttcgcagatccgccgcttcaacctgcacaccggcgattcgatcgaaggcgaa
gtgcggacaccgaaagacggcgagcgctatttcgcactggtcaaggtcgacaaggtcaac
ggcgaatcgccggaagcgtcgaagcaccgcatcctgtttgaaaacctgacgccgctgcac
ccgaacaagccgctgccgctggaacgcgacatgcgcggcgaagaaaacatcaccggccgc
atcatcgacatgatcgcgcctatcggcaagggccagcgcggcctgctggtagcgtcgcca
aagtccggtaaatcggtcatgctgcagcacattgcgcatgcgatcaccaccaaccatcca
gacaccgtgatgatcgtcctgctgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgctcggtgcgcggcgaagtggttgcctccactttcgacgaaccggccacgcgccacgtg
caagtcgccgaaatggtgctggaaaaagccaagcgcctggtcgaaatgaaaaaagacgta
gtgatcctgctggactcgatcacccgcctggcgcgcgcctacaataccgtgatccctgcc
tccggcaaggtgctgaccggtggtgtcgacgccaatgcgctgcagcgtccgaagcgtttc
ttcggcgccgcccgcaacatcgaagaaggcggttcgctgaccatcatcgccactgccctg
atcgaaaccggcagccgcatggatgacgtgatctacgaagaattcaagggtaccggcaac
atggaagtccacctggaacgccgcctcgccgagaaacgcgtgtacccgtcgatcaacctg
aacaagtccggcacccgccgtgaagaattgctgatcaagcctgaccagctgcaaaagatc
tgggtgctgcgcaagctgctgtacagcatggatgaaatcgaagcgatggagttcatcctc
gacaagatgaagtcgaccaagaacaacgccgagttcttcgacatgatgcgccgcggcggc
taa
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