Collimonas fungivorans: CFU_1036
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Entry
CFU_1036 CDS
T01583
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_1036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_1036
Enzymes [BR:
cfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFU_1036
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFU_1036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEK60868
UniProt:
G0AIT5
LinkDB
All DBs
Position
1212974..1214494
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AA seq
506 aa
AA seq
DB search
MSDIQPEIQSEIQSEMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIP
VVLQGRDVMGAAQTGTGKTAGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQV
AENVKAYCRHTPLRSTVVFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQ
ILVMDEADRMLDMGFLPDLQRIINLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVA
RSNATADNVTQTMYHVNEQTKAEAVSYIIRERNLKQVIVFSNTKIGASKLARHLENEGVN
ASAIHGDKTQNERMAALEAFKRGEIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVH
RIGRTGRAGASGDAISLYADKDERLLVDIEKMIKYKFVRAELTGFVAKPASAERERSSGR
GADARNGRGERGEGRAPASDRSTQHTRSAYTSTPTSRKEKVDPWFLKPYEPTLAAEVDTS
SVAPAGGSIKPSKVKLAALLGGLPKN
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatattcaacctgagattcagtccgagattcagtctgagatgcaagctgatcca
gcagtgccaaccacacccaccgtccgtttcgcagatttcgggctgtccccggatatcctg
cgggcattgaacgatcagggttatgtccatcccacgccgatccaggcggaagccatcccg
gtggtgctgcagggacgcgacgtgatgggggcggcgcaaacgggaaccggcaagacagcc
ggtttttccttgcctatcatccagctgctgctggcgcatgccaataccagcgcctcgccg
gcgcggcatccggtgcgcgccctgatcctgacgccgacgcgtgaactggccgaccaggtc
gcggaaaacgtcaaagcctattgtcggcatacccccctgcgttcgaccgtggtgttcggc
ggcgtcgatatcgcgccgcaaaccgcagccttgcgttccggcatcgagatcgtgattgcg
acgccgggccgcctgctggaccacgtgcagcaaaagaccctgaacctgtcgcagacgcaa
atcctggtgatggacgaagccgaccgcatgctggacatgggtttcctgccagacctgcag
cgcatcatcaacctgttgccgaaagagcggcagaacctgatgttctccgccacgttctcg
ggcgagatcaagaagctggcggcgactttcctcaagaacccggtgacgatcgaagtggcg
cgcagcaacgccaccgccgacaacgtgacgcagaccatgtaccacgtcaatgagcagacc
aaggctgaggcggtgtcgtacatcatccgcgaacgcaacctgaagcaggtcatcgttttc
tcgaataccaagatcggcgcatcgaaactggcccgtcacctggaaaacgaaggcgtcaac
gcctcggcgatccatggcgacaagacgcaaaatgagcgcatggcggcgctggaagcattc
aagcggggcgaaatcgaagtgctggtggcaactgacgtcgccgcgcgcggcctggatatc
gccgaactgccgtgcgtgatcaattttgatttgccgtacaacgcagaagactatgtgcac
cgtatcggccgcaccggccgcgccggcgcttccggcgatgcgatttccctatatgccgac
aaggacgaacgcttgctggtcgacatcgaaaagatgatcaagtacaagttcgtgcgcgcc
gagctgaccggatttgtcgccaagcccgcaagcgccgaacgcgagcgttcttccggacgc
ggcgccgatgcgcgcaacggccgtggcgaacgtggcgaggggcgcgcccctgcgtccgac
cgcagcacgcagcatacacgcagcgcctacacttcgacgccgacttcgcgcaaggaaaag
gtcgatccgtggttcctcaagccttacgaaccgacgctggcagccgaggtggacacctcc
agcgtagcgccggcaggcggctcgatcaagccgtcgaaggtgaagctggccgccttgctg
ggcggactgccaaagaactga
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