Collimonas fungivorans: CFU_1041
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Entry
CFU_1041 CDS
T01583
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03030
DNA replication
cfu03430
Mismatch repair
cfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFU_1041 (dnaE)
03430 Mismatch repair
CFU_1041 (dnaE)
03440 Homologous recombination
CFU_1041 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfu03032
]
CFU_1041 (dnaE)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_1041 (dnaE)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFU_1041 (dnaE)
DNA replication proteins [BR:
cfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CFU_1041 (dnaE)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CFU_1041 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AEK60873
UniProt:
G0AIU0
LinkDB
All DBs
Position
1218190..1221831
Genome browser
AA seq
1213 aa
AA seq
DB search
MLCVYESDEFIGRDIDVRMAGLHDVFLGKSLIYQYYKRRPQECPILPLEAGPQGKIPAMT
TPQFIHLRLHSEYSIVDGLVRIDDVVKAAAGDKQAALGISDLANLFGMVKFYKAARGKGI
KPIIGCDVWITNDDDRDKPSRLLLLVKNRRGYLQLCELLSRAWLENLHRGRAEIRAEWLA
ELTQQNGGNGLIALSGAHFGDIGIAIDNGNTGLAERCIERWAAIFPDNFYVEIQRADQPN
MEAHVRQAVALAAKFGVPVVATHPIQFLDKEEFIAHEARTCIAEGEMLANARRVRRFNDQ
QSFKTQAEMAELFADMPAALQNSIEIAKRCNLTLQLGKPQLPDFPTPDGMTIGDFLIQQS
QEGLELRLLHLFPDQAKREQQRQRYQDRLKFETDTIIKMGFPGYFLIVAEFIRWAKQNGV
PVGPGRGSGAGSLVAYSLQITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQ
HVKDLYGKDAVSQIATFGTMAAKGAIRDVGRVLDFGYNFCDGISKLIPFKPGKHVTIADA
IQEEPMLAERLENEEEVKQLLNLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGD
AGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPAMADFSLEKLPLNDRPS
YELLTAAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGE
RFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHR
QIFRDGAAKDGLTEAKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMA
ANLSLAMDDTEKIKILVEDSLVVCKLTLLPPDINLSDYRFTPEGEPGKKATFIRYGLGAV
KGSGQNAIEAIIAARQEKPFVDLFDFCLRVDKRQINRRTIESLIRAGAFDCFKVDRGILL
ASVPRAMEAADQKLASANQVSLFGGDDSDLEAPIEYVQAAPWTDKQKLTEEKSALGFYLS
GHLFHAYAAEARRFARTPLGSLEPSREPRVLAGIISGLRAQMTQRGKMMIVTLDDGSATV
DVTVYNEQFEPNKAFFKEDEFLVVHGKVSEDRFNGGLRVSAEKVMDIATARIQYGRQIVL
SLSSPAQKIDATQLKDMLSSHRSGNGLPMTLRYTGDGVACEILLGDEWRVSPSDGLQLAL
VEKVGKEAVAVEY
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgctctgcgtctatgaaagtgatgaatttataggccgcgatattgacgtaaggatggct
ggactgcatgatgtatttctcggtaagtcgttgatttatcagtattataaacgccggccg
caggaatgcccaattttgcccttggaggcagggcctcagggtaaaataccggccatgacg
acaccgcaatttatccatctccgcctccattccgagtattccattgtcgacggcctggta
cgcatcgacgatgtcgtgaaagccgctgccggcgacaagcaggcagcacttggcatctcc
gacctcgccaacctgttcggcatggtcaaattctataaggctgcgcgcggcaagggcatc
aagccgatcatcggctgcgatgtctggatcaccaatgacgacgaccgcgacaagccgtcg
cgcttgctgctgctggtcaagaaccgccgcggttatttgcagctgtgtgaactgttgtcc
cgggcctggctggaaaacctgcatcgcggccgcgcggaaatccgcgccgaatggctggcc
gaactgacgcaacagaatggcggcaacgggctgattgccttgtctggcgcccatttcggc
gacatcggcattgccattgacaatggcaatacaggattggcggagcgttgcatcgagcgg
tgggcggcgattttcccggacaatttctatgtcgagatccagcgcgccgaccagcccaac
atggaagcacatgtgcgccaggcggtggcgctggctgccaaattcggcgtgccagtggtg
gctacccatccgatccagttcctggataaagaagaattcattgcgcatgaagcgcgcacc
tgtatcgccgaaggcgaaatgctggccaatgcgcgccgcgtgcgccgtttcaacgaccag
caatcgttcaagacccaggccgaaatggccgagctgttcgccgacatgccggccgcgctg
caaaactccattgaaatcgccaagcgctgcaacctgacgctgcaattgggcaagccgcaa
ttgccggatttcccgacgccggacggcatgaccattggcgatttcctgatacagcaatcg
caggaaggcctggagctgcgcctgctgcatttgttcccggatcaagcgaagcgcgaacag
cagcgccagcgctaccaggaccggctgaaattcgaaaccgacaccatcatcaagatgggt
ttccccggctacttcctgatcgttgccgagtttatccgctgggccaagcagaatggcgtt
ccggtcggaccgggacggggttcgggggccggttcgctggtcgcatattcactgcagatc
actgacctcgatccgctcaaatacaatctgctgttcgaacgtttcctgaatcctgagcgc
gtatcgatgcccgacttcgatatcgacttttgccaggaagggcgcgaccgcgtcatccag
cacgtcaaggatttgtacggcaaggatgcggtatcgcagattgccaccttcggcaccatg
gcggcgaagggcgcgatccgcgacgtcggccgggtgcttgattttggctacaatttttgc
gacggcatctccaagctgattccgttcaagccgggcaagcacgtcacgattgccgacgcc
atccaggaagagccgatgctggccgaacgcctggagaacgaggaagaggtcaagcagctg
ctcaacctggcgcagcaagtcgaaggcatcgcgcgcaacatcggcatgcatgccggcggc
gtgctgatcgcacccggcaagctgaccgatttctgcccgctgtatacacagggcggcgat
gccggcgtggtgtcgcagtacgataaagacgacgtcgaagccgtcggcctggtcaagttc
gactttttgggtttgaccacgctgacgatccttgatcgcgcggtgcgctacatcaagcag
ctcgatccggccatggccgacttcagcctggaaaaactgccgctcaacgaccggccatcg
tatgaattgctgaccgccgctaaaacagtggccgtgttccagcttgaaagccgcggcatg
caaggcatgctgaaagatgcgcggcccgaccgcttcgaagacattatcgcgctggtggcg
ttgtaccggccgggtccgatggacctgatccccgatttctgcaaacgcaagcacggcgaa
cgcttcgactatcccgacccgcgtactgaaggcatcttgtcggaaacctatggcatcatg
gtgtatcaggagcaggtgatgcagatggcgcaggtggtcggcggttactcgctcggcggc
gcggatttgctgcggcgggcgatgggtaagaaaaaagcggaagagatggcggagcatcgc
cagattttccgcgacggcgccgccaaggacggtttgaccgaagccaaggccgatgagatt
ttcgacttgatggaaaagttcgcgggctacggcttcaacaagtcgcatgccgccgcttac
gcgttgctgtcttatcacaccgcttacctgaaagcacatcaccccgccgcgttcatggca
gccaacttgtcgctggcgatggacgacacggaaaagatcaagatcctggtggaagattcg
ctggtggtgtgcaagctgaccttgctgccgccggacatcaatctgtcggattaccgtttc
acgccggaaggcgagccgggcaagaaggcgacgttcatccgttacggcctcggtgcggta
aaaggttcgggacagaacgcgattgaagccatcatcgccgcccgccaggaaaaacctttc
gtcgacctgttcgatttctgcctgcgggtggacaagcgccagatcaaccgccgcaccatc
gagtcgctgatacgcgccggtgcattcgattgtttcaaggtcgaccgcgggatcctgctg
gcttcggtgccgcgcgcgatggaagctgctgaccagaaactggcatctgccaaccaggtg
agcctgtttggcggcgacgacagcgatcttgaagcgccgatcgaatacgtgcaggcggcg
ccatggaccgacaagcaaaaactgacggaagaaaaaagcgcgcttggcttctatctgtca
ggccatctgttccatgcctatgccgccgaagcgcgccgcttcgcgcgcactccgctcggc
agcctggaaccgtcgcgcgaaccgcgcgtcctggcgggcatcatctccggcttgcgggcg
caaatgacgcagcgtggaaaaatgatgatcgtgacgctggacgacggcagcgcgactgtc
gacgtcactgtctataacgaacagtttgaaccgaacaaggcgtttttcaaggaagacgaa
ttcctggtggtgcatggcaaggtttcggaagatcgtttcaacggcggtttgcgggtgtcg
gcggagaaggtgatggatattgccactgcacggattcagtacggccgtcagatcgtgttg
tccctgtcctcgccggcgcagaaaatcgatgcgacgcagctgaaggacatgctgtcctcg
catcgttccggcaacggtttgccgatgacgctgcgctacaccggcgacggcgtagcttgc
gaaatactgctgggcgatgaatggagagtgtctcccagtgatggcttgcagttggccctc
gtagaaaaagtcgggaaagaagcggtcgcagtggagtactaa
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