Collimonas fungivorans: CFU_1423
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Entry
CFU_1423 CDS
T01583
Symbol
hrpA
Name
(GenBank) helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfu
Collimonas fungivorans
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_1423 (hrpA)
Enzymes [BR:
cfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFU_1423 (hrpA)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFU_1423 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
ABC_tran
SRP54
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEK61255
UniProt:
G0AJP0
LinkDB
All DBs
Position
1679932..1684029
Genome browser
AA seq
1365 aa
AA seq
DB search
MGWAKQLMICSGCSYGGLYNSILMSVSESNKPSRPADRPSSQRSAGRPSQPRPASPRPEP
VRPLPERNPLPPVVFPEELPVSGKRGEISAAIAANQVVIVCGETGSGKTTQLPKICLELG
RGQTGMIGHTQPRRIAASSTAKRIAQELNSPLGEHVGYKVRFNDTLSKGAWIKLMTDGIL
LAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFA
RHFGTADKPAPVIEVSGRLYAVEVRYRPVDNADRSGLSPAAGTAAAKPNAPQNAAQRDRE
QRDLMDAVVDAVDELARIGSGDVLVFLPGEREIRDAAEALRKHHPAHVEILPLFARLSAQ
EQERVFKPSNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPIAQ
SAANQRAGRCGRVAAGVCIRLYEEQDYLQRPKFTEPEIMRSSLASVILRMKSLHLTDVET
FPFIEPPPGRAIADGYQLLQELGAVDDNNQLTKTGRQLAKLPLDPRVGRMILAALDNVCL
SEMLVIAAALSVQDPRDRPLEAQGAADQAHKKFADEKSEFLSYLKIWKWFEDAIEHKKTN
RQLMDNCRANFLSQLRLREWRDVHSQLLTIVREQGWRLNEAPATYEQLHCALLTGLLGNV
GFKADEDSHYLGARAIKFYLWPGSHLSKKAGKWVMAAELVDTSRLYARCISQIQPEWLEK
VGAHLLKKSYGEPRWEKRTAQVSASERATLYGLVVYSQRRINFGLINPQEAREIFIRDAL
VGGEFETRAPFFAHNQKLIREIENLEHKSRRLDVLVDDELIAAFYDKLIPADICNGIAFE
KWHKDMSVQTPKLLFLNRDDLMRHEAAGITTELFPKVMRVAGIEMALSYHFEPGTPRDGV
TLTVPLYALNQVYVDRCEWLVAGMLKEKVHLLLKSLPQKIRRNCVPLPDYAAGFCERIQA
RHVFGHGNLLDALMADIRTETTVAARSTDFKLETLPAHHSMNFKVVDEHGRQLDMGRNLA
ALQAEFGGQARESFQRLASVTVADEASVPANDVAQATGKTAAPAATRVTAQPAAKAADGA
NAQFSNLTAWTFGELPELLEIQQGKQTLIGFPALVDRGTHCDLEVFDDPNEAVRIHHLGL
RRLFALQLKEQLKFLEKNIPGLQQMGMQFLALGSQEELRDQIIHAGLERACLQLPLPRTA
AEFAQRKEEGKSRLGLLCNEIARLAALILAEYHGLPKRLQGAKGHPQAVADIQAQMQSLV
SKRFIADNDYANLTHFPRYLKAVNVRLEKLRADPARDTRLMTEWAQVATPWQRAQKDRSG
KSDPKQAEFRWLLEELRVSLFAQELRTPMPVSVKRLQKVWETMQR
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgggctgggcaaaacagttgatgatatgcagcggctgcagctatggcggtctgtataat
tccatcctcatgtcagtatcagaatccaacaaaccatcgcggccagcagaccgcccaagt
tcccagcgcagcgctggccgtccatcccagccgcgtccggcatcgccacgccccgagcct
gtgcggccattgcctgagcgcaatccgttgccgccggtcgtgttccccgaggaactgccg
gtttccggcaagcgcggcgaaatttcggcggcgatcgcagccaaccaggtggtcatcgtc
tgcggcgaaaccggttcgggtaaaaccacccagctgccgaagatctgcctggagctgggg
cgcggccagaccggcatgatcggccatacccagccgcgccggatcgccgcatcctcgacc
gccaagcgcatcgcccaggagctcaactcgccgctgggcgagcacgtcggctacaaggtg
cgtttcaacgacaccctgagcaagggcgcctggatcaagctgatgaccgacggcatcctg
ctggccgagacccagaccgatcccttgctgcgccagtacgacaccatcatcatcgatgaa
gcgcacgagcgcagcctgaacatcgatttcctgctgggctacctgaagcagctgctgccg
aagcgtccggacctgaaaatcatcatcacctcggctaccatcgatgccgaccgtttcgcc
cgccattttggtacggcggacaagccggcgccggtaatcgaagtgtccggccggctgtac
gcggtcgaagtgcgctaccggccggtcgacaatgccgaccgcagtggcctcagtcctgcc
gcaggtacggctgcagccaagccgaatgcgccgcaaaatgcggctcagcgcgaccgcgag
caacgcgacctgatggatgcggtggtggacgcggtcgacgagctggcgcgcatcggctcc
ggcgatgtgctggtgttcctgccgggtgagcgcgaaatccgcgacgccgccgaagcgctg
cgcaagcaccatcctgcccacgtcgaaatcctgcctttgttcgcccgtctgtcggcgcag
gagcaggaacgcgtattcaagccgtccaacgcgcgccgcatcgtgctggctaccaacgtg
gccgaaacttcgctgaccgtgccgggcatccgctatgtggtggatgccggcctggcgcgg
gtgaaacgctacagctaccgcaacaaggtcgagcagctgcagatcgagccgatcgcgcag
tcggcggccaaccagcgcgccggccgttgcggccgggtcgccgccggcgtctgcatccgc
ctgtacgaagaacaggattacctgcagcggccgaaattcaccgagccggaaatcatgcgt
tcgtcgctggcttcggtcatcttgcgcatgaaatcgctgcatttgaccgatgtcgaaacc
ttcccgttcatcgaaccgccgccgggccgcgcgattgccgacggctaccagctgctgcag
gaactgggcgcggtcgacgacaacaaccagctgaccaagaccggccgccagctggccaag
ttgccgctcgatccgcgcgtcggccgcatgatcctggcggcgctggataatgtctgcctg
agcgaaatgctggtcattgccgccgccttgtcggtgcaggacccgcgcgaccggccgctg
gaagcgcagggcgcggccgaccaggcgcacaagaaattcgccgatgaaaaatccgaattc
ctgagctacctcaagatctggaaatggttcgaagacgcgattgagcataagaaaaccaac
cgtcagctgatggataactgccgcgccaatttcctgtcgcaactgcgcttgcgcgagtgg
cgcgatgtccattcgcagctgctgacgatcgtacgcgagcagggctggcgattgaacgaa
gcgccggctacctacgagcagctgcattgcgccttgctgaccggtttgctcggcaacgtc
ggtttcaaggccgacgaagattcgcactacctgggcgcgcgcgccatcaagttctacctg
tggccgggttcgcatttgtcgaagaaggccggcaagtgggtgatggcggccgaactggtc
gacaccagtcgcctgtatgcacgctgcatctcccagatccagccggaatggctggagaag
gtcggcgcccacctgctgaagaaatcgtacggcgagccgcgctgggaaaaacgcacggcg
caggtctcggcctcggagcgcgcgactttgtacgggctggtggtgtatagccagcgccgc
atcaatttcggcctgatcaatccgcaggaagcgcgcgagatattcatccgcgatgcgctg
gtcggcggcgagttcgaaacccgggcgccgttcttcgcccacaaccagaaactgatccgc
gagatcgagaacctggagcacaagtcgcgccggctggatgtgctggtggatgacgaactg
attgcggccttctacgacaagctgatcccggccgatatctgcaacggcatcgcgtttgaa
aaatggcacaaggacatgagcgtgcagacgcccaagctgctgttcctcaaccgtgacgac
ctgatgcggcatgaagcggccggcatcaccaccgagctgtttccgaaagtgatgcgggtg
gccggcatcgaaatggctttgtcctatcacttcgagccaggcacgccgcgcgacggcgtg
acgctgacggtgccgctgtatgcgctgaaccaggtgtatgtcgaccgctgcgaatggctg
gtggccggcatgctgaaggagaaagtccatctgctgctgaaatccttgccgcagaagata
cgccgcaattgcgtgccgctgcccgactatgccgccggtttctgcgagcggatacaggcg
cgccatgtgttcggccacggcaacctgctggatgccttgatggcggacatccgcaccgaa
accaccgttgccgcgcgcagcaccgatttcaagctggagaccttgccggcccatcattcg
atgaacttcaaggtggtcgacgagcacggccgccagctcgacatggggcgcaacctggcg
gcgttgcaggccgaattcggcgggcaggcgcgcgagagtttccagcggctggcgagcgtg
acggtggccgacgaggcgtcggtcccggcgaacgatgtggcgcaagcaacggggaaaacc
gcggcgccggcggcaacccgcgttactgctcaaccagcggcgaaggccgccgatggcgcc
aacgcacagttcagcaacctgaccgcctggaccttcggcgaactgcccgaactgctggaa
atccagcaaggcaagcagaccctgatcggcttcccggcgctggtggatcggggcacgcat
tgcgacctggaagtcttcgacgatcctaacgaggcagtgcggatccatcatcttggcctg
cgccggctgttcgccttgcagctcaaggaacaattgaaattcctcgagaaaaacatcccc
ggcctgcagcagatgggcatgcagttcctggcgctgggatcgcaggaagaactgcgcgac
cagatcatccatgccggcctggaacgcgcctgcctgcagctgccgttgccgcggaccgcg
gctgagttcgcgcagcgcaaggaagagggcaagtcgcgcctgggtttgctgtgcaatgaa
attgcgcgcctggcggcgctgatcctggccgagtatcacggcttgccgaagcgtttgcag
ggcgccaagggccatccgcaggcggtggccgacatccaggcgcagatgcagtcgctggtc
agcaagcgtttcattgccgacaatgactacgccaacctgacccatttcccgcgctacctg
aaggcggtcaacgtgcggctggagaaattgcgcgccgacccggcccgcgatacacggctg
atgacggagtgggcgcaagtggcgacgccgtggcagcgcgcgcaaaaggaccgcagcggc
aaaagcgatccgaaacaggctgaattccgctggctgctggaagagctgcgggtgtcgctg
tttgcgcaggaactgcggactccgatgccggtttcggtcaagcgcttgcagaaagtatgg
gaaaccatgcagcgttag
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