Collimonas fungivorans: CFU_1695
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Entry
CFU_1695 CDS
T01583
Symbol
ybbB
Name
(GenBank) Selenophosphate-dependent tRNA 2-selenouridine synthase
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
cfu
Collimonas fungivorans
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfu03016
]
CFU_1695 (ybbB)
Enzymes [BR:
cfu01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
CFU_1695 (ybbB)
Transfer RNA biogenesis [BR:
cfu03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
CFU_1695 (ybbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
AAA_33
AAA_18
AAA_22
ACT_6
ABC_tran
CoaE
AAA_23
AAA_25
AAA_16
SMC_N
Adeno_IVa2
FtsK_SpoIIIE
RsgA_GTPase
RNA_helicase
DUF7787
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AEK61527
UniProt:
G0A8Q4
LinkDB
All DBs
Position
1987375..1988436
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AA seq
353 aa
AA seq
DB search
MKYPALLSFQEVLPRLKQFDAVIDARSPSEFAEDHIPGAINCPVLDDAQRAQVGTMYKQV
NTFEAKKLGAVLVARNIACHIETLFLDKPREWMPLVYCWRGGNRSGAMAHIMAKIGWPVA
QLDGGYQSYRRHVNASLAELPLRFGFKVICGPTGSGKSRLLQVLAQQGAQVLDLEQMAAH
RGSVLGNLPSELQPSQKTFESRLWDTLQGFDPRYPVFVESESKKVGNLRVPEVLMESMRN
SPCYAVALSRPDRVRLLLEDYVHFIADPALLNTQLACLAYVHGRDKVAFWQQLSLSGRIE
ELVDELLLKHYDPAYAQSIKRNFDQFSEAQVIDLPDISDAAFARVAQQLHQEK
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacccggcattgctgtcctttcaagaagtccttccccggctcaagcagttcgac
gctgtcatcgacgcccgcagcccgtcggaatttgccgaagaccatattcccggcgctatc
aattgtccggtgctggacgatgcgcaaagagcgcaggtcggcaccatgtacaagcaggtc
aatactttcgaggcaaaaaagctgggcgcggtgctggtcgcccgtaatatcgcctgccat
atcgaaaccctgttcctggacaagccgcgcgaatggatgcccttggtttactgttggcgc
ggcggcaaccgcagcggcgccatggcgcacatcatggcaaaaatcggctggccggtggcg
cagctggacggcggctaccagtcgtatcgcaggcatgtcaacgccagcctggccgagctg
ccgctgcgcttcggcttcaaggtgatttgcggccctaccggcagcggcaagagccgcctg
ctgcaagtgctggcgcagcagggcgcgcaagtgctggacctggaacagatggcggcgcac
cgcggttcggtgctgggcaacctgccgagcgaactgcagccctcgcaaaaaactttcgag
agccggttgtgggacacgctgcagggtttcgatccgcgctatccagtgttcgtcgaatcc
gagagcaagaaagtcggcaacctgcgggtgccggaggtgctgatggaatccatgcgcaac
tcgccgtgttatgcggtggcgctgtcgcgtccggaccgggtgcggctgctgctggaagac
tatgtgcatttcatcgccgatcccgccttgctgaatacccagctggcttgcctggcctac
gtccatggccgcgacaaggtcgctttctggcagcagctgagtttgtcgggacggatcgag
gaactggtcgatgagctgttgctgaaacactatgacccggcttatgcgcagtcgatcaag
aggaatttcgatcagttttccgaggcgcaggtcatcgatctgccggatatttcggacgcc
gcctttgcccgcgtggcgcaacagctgcatcaagagaaataa
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