KEGG   Collimonas fungivorans: CFU_1920
Entry
CFU_1920          CDS       T01583                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein
  KO
K03666  host factor-I protein
Organism
cfu  Collimonas fungivorans
Pathway
cfu02024  Quorum sensing
cfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CFU_1920 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CFU_1920 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfu03019]
    CFU_1920 (hfq)
   03036 Chromosome and associated proteins [BR:cfu03036]
    CFU_1920 (hfq)
Messenger RNA biogenesis [BR:cfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CFU_1920 (hfq)
Chromosome and associated proteins [BR:cfu03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CFU_1920 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: AEK61752
UniProt: G0AK67
LinkDB
Position
2261829..2262065
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHTI
STVVPARAVNLNLESEAE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagtaataaagggcaattgttacaagacccgtttttgaacgccttgcgtaaagagcat
gttccggtgtctatctatctggtcaacggcatcaagcttcaaggccatatcgaatccttc
gatcaatacgtcgttttactgcgtaataccgttacccaaatggtatacaaacacaccatc
tcaaccgtagttcctgcacgcgctgtcaatctgaatcttgaatctgaagcagaataa

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