Entry |
|
Symbol |
ligD
|
Name |
(GenBank) Ku domain protein
|
KO |
K10979 | DNA end-binding protein Ku |
|
Organism |
cfu Collimonas fungivorans
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cfu00001]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFU_1973 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:cfu03400]
CFU_1973 (ligD)
DNA repair and recombination proteins [BR:cfu03400]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFU_1973 (ligD)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
2318774..2319670
|
AA seq |
298 aa
MSRRVIWKGAISFGLVHIPVALHAATSEQGLDFDWLDKRSMDPVGYKRVNKRTGREVARE
NIVKGIAYEEGQYVVLSQEEIAAAYPKTTQTIEIEAFVAATDIPFVYLQRPYYIAPINKA
AKVYALLREILHKSGKVGIAKVVIQTKQHLALLAPVGPALVLELLRWGDEVRSWDELDLP
PAGSKAAGLTAKELQMAKQLVSEMSQRWQAEDFTDTFKEQILKLVEEKIKAGDTAAVSEV
ETASADTAGAKIYDLTEMLQRSLNKSPGKAAKPRSAKAPASKRTSAAKGKPSPKRSTA |
NT seq |
897 nt +upstreamnt +downstreamnt
atgagccggcgcgtgatctggaaaggggcgatatcgttcggcctggtccatattccggtc
gccctgcatgcggcgacgtccgagcaggggctggatttcgactggctggacaagcgttcg
atggatccggtcggctacaagcgcgtcaacaaaagaaccggccgggaggtggcgcgcgaa
aacattgtcaagggcatcgcttatgaggaagggcagtacgtggtcctgtcgcaggaagaa
atcgctgccgcctatccaaagaccacgcagactattgaaatagaagcgtttgtcgccgcg
acggatattccttttgtgtacctgcagcggccttattacatagcgcctatcaacaaagca
gccaaagtgtacgcgctgttgcgcgagatactccacaaaagcggcaaggtcggcatcgcc
aaggtggtgatccagaccaagcagcacctggccctgctggcgccggtcggtccggcgctg
gtgctggagctgctacgctggggcgacgaggtgcgcagctgggacgaactggacctgccg
ccggcgggcagcaaggccgccggcctgactgccaaggaattgcagatggcgaaacagctg
gtaagtgaaatgagccagcgctggcaggctgaagatttcaccgatacgttcaaggaacag
atcctgaaactggtcgaggaaaaaatcaaggctggcgacaccgctgcggtcagcgaagtg
gaaacagcgtccgccgataccgccggcgcaaagatctatgacctcaccgaaatgcttcag
cgcagcctgaacaaaagcccaggcaaagccgccaagccgcgttcggccaaagccccggcc
agcaaaaggacgtcggcagccaagggcaaaccttcccctaaacgttcaacagcctga |