Collimonas fungivorans: CFU_2870
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Entry
CFU_2870 CDS
T01583
Symbol
rnc
Name
(GenBank) Ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CFU_2870 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_2870 (rnc)
03009 Ribosome biogenesis [BR:
cfu03009
]
CFU_2870 (rnc)
03036 Chromosome and associated proteins [BR:
cfu03036
]
CFU_2870 (rnc)
Enzymes [BR:
cfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
CFU_2870 (rnc)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFU_2870 (rnc)
Ribosome biogenesis [BR:
cfu03009
]
Eukaryotic type
90S particles
RNase
CFU_2870 (rnc)
Prokaryotic type
rRNA processing factors
CFU_2870 (rnc)
Chromosome and associated proteins [BR:
cfu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
CFU_2870 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AEK62696
UniProt:
G0A9S3
LinkDB
All DBs
Position
complement(3401142..3402143)
Genome browser
AA seq
333 aa
AA seq
DB search
MDLMLLQNRLGHTFKDATLLQQALTHRSHSTLHNERLEFLGDSILNCVVASLLFDRYTKI
DEGDLSRVRANLVKQQSLYEIAQRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI
FLDAGFDAARDVIRALYIPILDTVDPKTLGKDAKTLLQEYLQGKKIALPQYNVVATHGAA
HNQEFEIECLVPKLDIQVFGNGGSRRAGEQAAAKLALEAVQKAFVKAPAAPRKAKPRTAQ
LKLSGIATIQPDAPDAAPDDAAKPAAPAKDKGLVEVAAAKAPAKAHVPAANGSAEAAAPS
KAASQAAETAAAATPAAAPSNATPHTTSKSKTA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggacctcatgttattgcagaatcggctaggccacactttcaaggatgctacgttattg
cagcaggccttgacgcatcgcagccatagcaccttgcataacgaacggttggaattcctc
ggcgattcgatcctgaactgcgtcgtcgcttcgctgttgttcgaccgttacaccaagata
gacgagggcgacctgtcgcgggtgcgcgccaacctggtcaagcagcaatcgctgtatgaa
attgcgcaaaggctggagttgtcgcaattcctgcgcttgggcgagggtgaattgaaatcc
ggcggcttccgccggccttcgatcctggccgatacgctggaagcgctgttcggtgcgatt
ttcctggacgccggtttcgacgccgcgcgcgacgtgatccgcgccttgtacatcccgatc
ctcgatacggtcgatcccaagactcttggcaaggacgccaagaccctgctgcaggaatac
ctgcaagggaaaaagatcgccttgccgcaatataacgtggtggccacgcatggcgccgcg
cacaaccaggaattcgaaatcgaatgcctggtgccgaagctggatatccaggtcttcggc
aacggcggcagccgccgcgccggcgagcaggccgccgccaagctggcgctggaagccgtg
caaaaggcattcgtgaaagcgccggcggcgccgcgcaaagccaagccgcgcaccgcgcaa
ttgaaactgagcgggatcgcgacgatccagccggatgcgcccgatgccgcgccggacgat
gccgccaaaccggctgctccggccaaggacaaaggcctggttgaagtcgcggcggccaag
gcgcctgccaaagcccacgtgcctgccgccaacggcagcgctgaagcggctgctccatcc
aaggcagccagccaggctgcggaaaccgcggccgccgcaaccccggcggcagccccatcc
aatgcaacaccccatactacgagtaaatcgaaaaccgcatga
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