Collimonas fungivorans: CFU_2894
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Entry
CFU_2894 CDS
T01583
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_2894 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_2894 (rne)
03009 Ribosome biogenesis [BR:
cfu03009
]
CFU_2894 (rne)
Enzymes [BR:
cfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFU_2894 (rne)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFU_2894 (rne)
Ribosome biogenesis [BR:
cfu03009
]
Prokaryotic type
rRNA processing factors
CFU_2894 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEK62720
UniProt:
G0A9U7
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All DBs
Position
3423255..3426377
Genome browser
AA seq
1040 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARTYFKEGVDVRSASIKDALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDQLDLPSGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGTQGKGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIHDQAQ
QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGGDIETTAFNTNCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETR
LKDALRYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVGIILIPNKHLETPH
YKLERLKHDDPRLEETQASYAMAEQADTDIGYSKTQKEEGKPRQEAVVKGITPDQPAPIV
ERKPVEARPTAVAAASPAETGFLGKIFGFFFSKPAAPAATPAATAEAKGPQQRGDRGDRN
NRGQRGRNRSGRNRDGSAQETRDDNAKKPLVEAVEAKTQQARPPRPPREPKEQRESTKEQ
REPSDSKAETRNEGRRERAERPPRPPREERKENLSEIKVDETLLKGGVVAAAGVAVSSIA
EAADATEAVQADSGRVEAKAGEDEEPRRRRRRGGRNRNRRDRDGAEGTTEGSSDDIETGE
AAAAADVADTGNDADAPEAVSAPAPAEASSPAGNSVPMMASAVPMAQESAAPAVETTAAP
TALSNAIAAPLVPQHIAPQEEAAPVVAEAAPAAAPVQEPVVAAPVVAEPKPAASEPVAVP
AAIVPEQPAAPQAAPAVASQPLAEPQIEETPALLAPAAPVVAPVVAPVIAPVVAETAAPV
AEAPAVIKAAVSSGSPKVEDLQSVLAAAGLTLAATDPSKLRAAQEATANIVAAPHVPRER
KPLPAQSSEPLVQIETQRPQ
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgccacgcagcaagaagaactgcgcgtggctattgttgac
gggcaaaagctcatcgacatcgatatcgaaaccaccggacgcgaacaacgcaagtccaat
atctacaaaggtgtgattacccgtatcgagccgtcgctggaagcctgtttcgtcaactac
ggtgaagagcgtcatggctttttgccgttcaaggaagttgcccgcacttactttaaagaa
ggtgtagacgtccgcagcgcatcgatcaaggatgccctgcgcgaaggccaggaaatcatg
gtgcaggtcgaaaaggaagagcgcggcaacaaaggcgcggccctgacctccttcgtttca
ctggctggccgttacctggtcctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cgggtcgaaggcgaggatcgccaggaactgcgcgaaaccatggatcagctggacctgcct
agcggcatgtcggtgattgcccgcactgccggcatcggccgcaacgttgacgaattgcaa
tgggacttgaactacctgatgcaactctggcgcgccatcgaaggcgccggcacccaaggc
aaaggcgcgttcctgatttatcaggaatcgtcgctggtgatccgtgcgatccgcgattat
ttccaaccggacatcggcgaaatcctgatcgacaccgacgaaatccacgaccaggcccag
cagttcatggcccacgtcatgcctgacatggtgcatcgcgttaagcgctaccgcgacgac
gtgccgctgttctcccgcttccagatcgaacaccagatcgaaaccgcgtattcgcgcacc
gtgccgctgccatccggcggcgccatcgtgatcgaccataccgaagccctagtgtcggtt
gacgtcaactccgcccgtgctacccgcggcggcgacatcgagaccaccgccttcaacacc
aattgcgaagcagctgaagaagttgcgcgccaattgcgtttgcgcgatctcggcggcctg
atcgtgatcgacttcatcgacatggagaattcgaagaaccagcgcgaagtcgaaacccgc
ctgaaagacgccctgcgctatgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtcggaaggcagccacgtg
acttgcccacgctgcaacggcaccggccatatccgcgataccgaatcgtcagctctgcaa
gtcctgcgcatcatccaggaagaagcgatgaaagaaaactcggccgcgatccacgtccag
gcgccggtcgacgtcgccgctttcctgctgaacgaaaagcgcggcgagatcctgaagatc
gaaacccgtcaccgggtcggcatcatcctgatcccgaacaagcacctggaaaccccgcat
tacaagctggaacgcctgaagcacgacgatccgcgcctggaagaaacccaggccagctac
gccatggcagagcaagcggatactgacatcggctacagcaagacccagaaagaagaaggc
aagccgcgccaggaagccgtggtcaagggtatcacgccagaccagccggcccctatcgtc
gagcgcaagccagtggaagcgcgtccgacagcggttgccgctgccagcccggcagaaaca
ggtttcctcggcaagatcttcggcttcttcttcagcaagccggcagcgccggcagcaact
cctgccgctaccgccgaagccaagggcccgcagcaacgcggcgaccgtggcgaccgcaac
aaccgtggccagcgcggccgtaaccgcagtggccgcaaccgcgatggcagtgcgcaggaa
acacgcgacgacaacgccaagaaaccgctggtagaagctgtcgaagcaaaaacccagcaa
gcccgtccgccgcgtcctccgcgcgagcctaaggagcagcgggagtctactaaagagcaa
cgcgaacccagcgacagcaaggcggaaacacgcaatgaaggccggcgcgaacgcgccgaa
cgcccgccgcgtccgccacgcgaagagcgcaaggaaaacctgagcgaaatcaaggtcgac
gagaccttgctcaagggtggcgtagtcgccgctgccggcgttgccgtcagcagcatcgcc
gaagctgctgatgctacggaagcggtgcaagccgatagcggacgcgttgaagccaaagcc
ggtgaagacgaagaaccacgccgccgccgccgccgcggtggccgcaaccgtaaccgccgc
gaccgcgacggcgccgagggcaccactgaaggcagcagcgacgacatcgaaacaggcgaa
gccgctgcagcagcagacgtggccgataccggcaacgatgcagatgctcccgaggcagtg
agcgctccagctccagccgaagcaagcagcccggccggcaacagcgtaccgatgatggcc
tcggcagtgccgatggcacaggaaagcgctgctccggcagttgaaacgacagcggcgccg
accgccttgtcgaatgcaatcgcagcgccgctggtgcctcagcacattgctccgcaagag
gaagccgctcccgtcgtcgctgaagcggcgccggcagcagctcctgtgcaagagccggtt
gtggcagcgccggttgtggcagaacctaaaccggccgcatctgagccggtagccgttccc
gcagcaatcgtgccggaacaacctgctgcacctcaagcggctccggcagttgccagccag
ccgctagcagaaccgcagatcgaagaaacccctgcgctgctggctccggcagcgcccgtg
gttgccccggtggttgctcccgtgattgcccctgtggtcgctgaaacggcggcgccggta
gcagaagcgccagccgtcatcaaggcagccgtttccagcggatcgcctaaggtggaagac
ctgcaaagcgtactggctgcagccggcctgaccctggcggcgaccgatccgagcaaactg
cgcgctgcacaggaagcaacggccaacatcgttgccgcgccacatgtgccgcgcgagcgc
aagcctttgccggcgcagtccagcgaaccgctggtgcagatcgaaacccagcgcccgcag
taa
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