Collimonas fungivorans: CFU_3063
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Entry
CFU_3063 CDS
T01583
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_3063 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_3063 (pnp)
03016 Transfer RNA biogenesis [BR:
cfu03016
]
CFU_3063 (pnp)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFU_3063 (pnp)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFU_3063 (pnp)
Transfer RNA biogenesis [BR:
cfu03016
]
Prokaryotic type
tRNA degradation factors
CFU_3063 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
DUF5813
S1_TP0910
KH_NusA_2nd
KH-I_KHDC4-BBP
PCB_OB
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AEK62888
UniProt:
G0ACL4
LinkDB
All DBs
Position
complement(3601663..3603807)
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AA seq
714 aa
AA seq
DB search
MKGYIVFNKVTKTFQYGQHQVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQD
FFPLTVDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQVII
HVLSVNPEIDPDIAAMIGASAALSVAGIPFAGPVGAARVGYIDGQYVLNPTTSQLTKSAM
DLVVAGTETAVLMVESEAKQLSEEIMLGAVVFGHEQSKAVINAIHELVRDGGKPEVEWSP
APKNEALIARVAHFGEAKLREAYQTKDKQARTTKLKDATAEVNAALAAEAASIGGTAPDS
SEVSGILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQA
LVVATLGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRA
LQAALPAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIK
EGSKFAVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGR
IHILGKMQEAVPHGKTELSDFAPRLITVKINPEKIRDVIGKGGAVIRALTEETGTQIDIS
DEGVVTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLH
ISQIANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQEGGEAAPAAAQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggatatattgtgtttaataaagttacgaagacattccagtatggtcagcatcag
gttaccctggaaaccggcgagatcgctcgccaagcctccggcgcagtgctggtatcgatc
gaagataccgtcgtgctggctaccgtggtggcacgcaaagatgccaagccaggtcaggat
ttttttccattgaccgttgattacgttgaaaagacatacgccgctggccgtatcccaggc
ggtttcttcaagcgcgaaggccgtccttccgaaaaagaaaccctgacatcgcgcctgatc
gaccgtccgatccgcccgctgttcccagaaggttacctgaatgaagtccaagtcatcatt
cacgtgctgtcggtcaatcctgaaatcgatcctgacatcgctgcaatgatcggcgcttcg
gctgccctgtcggtcgccggcattcctttcgccggcccggtcggcgctgcgcgcgtcggt
tacatcgacggccagtacgtgttgaacccgaccacttcccagctgaccaagtcggccatg
gacctggtggttgccggtaccgaaaccgcggtgctgatggtggaatcggaagccaagcaa
ctgtcggaagaaatcatgctgggcgcggtcgtgttcggccacgagcaatcgaaggcagtc
atcaacgctatccacgaactggtgcgcgacggcggcaagcctgaagtcgaatggagcccg
gcgcccaagaatgaagcgctgatcgcgcgcgttgcgcatttcggcgaagccaagctgcgt
gaagcctaccagactaaagacaagcaagcccgcaccaccaagctgaaagacgctaccgca
gaagtcaacgcggcgctggctgccgaagctgcatcgatcggcggcactgcacctgattct
tcggaagtcagcggcatcctgtttgacctggaagccaagatcgtccgttcgcagatcttg
gaaggcgagccacgcatcgacggccgcgatacccgcaccgtacgtccgatctcgatccgt
accggcgtcctgccgcgtacccacggctcggcactgttcacccgcggcgaaacccaagcg
ctggtagtcgccacgctgggcaccgcacgcgacgagcaaaagatcgacgcgctgatgggc
gaatattcggaccgcttcatgctgcattacaacatgccaccgttcgctaccggcgaaacc
ggccgcgttggtacgccaaagcgccgcgaaatcggccacggccgcctggccaagcgcgcg
ctgcaagcagcactgccggcgccggaagatttcagctactcggtgcgcctggtatcggaa
atcaccgaatccaacggttcgtcgtcgatggcttcggtctgcggcggctgcctggcattg
atggatgccggcgtgccgatgcaggcacacgttgccggcatcgccatgggcctgatcaag
gaaggcagcaagttcgccgtcctgaccgacatcctgggcgatgaagatcacctgggcgac
atggacttcaaggtagccggcaccgccaacggcatcactgcgttgcagatggatatcaag
atccagggcatcaccaaggaaatcatgcaggtcgctttggcgcaagctaaagaaggccgt
atccatatcctgggcaagatgcaggaagcggttccgcacggtaagaccgagctgtccgat
ttcgcgccacgcctgatcaccgtcaagatcaatccggaaaaaatccgcgacgtgatcggc
aagggcggcgcagtgattcgcgccctgacggaagaaaccggcacccagatcgatatcagc
gacgaaggcgtcgtgacgatcgcttcggtggacgctgctgcaggccaggaagccaaacgc
cgcatcgaagaattgacggcttcggttgaagtcggcaaggtctacgaaggcacagtcctg
aagctgctggacttcggcgcgatcgtgcaagtattgccgggcaaagacggtctgctgcac
atcagccagatcgccaatgagcgcgtcaatgcagtcgccgactacctgaaagaaggccag
caagtgcgcgtcaaggttctcgaaaccgacgaccgcggccgtctgaaactgtcgatgaag
gcagcccaggagggcggcgaagctgctccggcggcagcgcagtaa
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