Collimonas fungivorans: CFU_3839
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Entry
CFU_3839 CDS
T01583
Symbol
pcnB
Name
(GenBank) Poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFU_3839 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfu03019
]
CFU_3839 (pcnB)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
CFU_3839 (pcnB)
Messenger RNA biogenesis [BR:
cfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFU_3839 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
AEK63663
UniProt:
G0AG13
LinkDB
All DBs
Position
complement(4519577..4520968)
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AA seq
463 aa
AA seq
DB search
MIKKLIRSILGKKKKDPTQPLILGPKQHGINPQLVSPNAVRVTKTLQDNGFKAFIVGGAV
RDLLLGVKPKDFDVATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQELIEVTTFRGASSD
GSPKDEHGRVLRDNTFGEQHEDAVRRDFTINAMYYDPATESVLDYHGGIDDIRAKTLRII
GEPEARFREDPIRMLRIVRFAAKLKFTIDPATRAPIPVMAALIDNVPAARVFDEMLKLLM
SGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFVTLALANTDVRVQQGKPVSPGFLF
ASLLWHQVLEKWTAYKAAGEFPIPALHLAADDVLEAQTDKLALQRKIASDMRDIWAMQPR
FERRAGKAPYKLLEHLRLRAGYDFLLLRCASGEIDSEIGEWWTGFMEGDGSERELLLAQK
PKVAAEAAPAKKRPRRRGSRSGAKGVNTGSSAGGRGNDEQGGQ
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaagctgattcgctccatccttgggaaaaagaaaaaagatcccacccaaccg
ttgatactcggcccgaaacagcatggcatcaatccgcagctggtgtcgccgaatgcggta
agggtcaccaagaccctgcaggataacggcttcaaggcctttatcgtcggcggtgcggtg
cgcgacctgctgctgggcgtgaaacccaaggatttcgacgtcgccaccaacgccacgccg
gaacaggtcaagcgcctgttccggcgtgctttcatcatcggcaagcggttccagatcgtg
cacgtgatgttcggccaggaactgatcgaagtcaccactttccgcggcgcctcctccgac
ggttcgccgaaagacgagcatggccgcgtgttgcgcgacaacaccttcggcgagcagcac
gaagatgcggtgcggcgcgatttcaccatcaatgcgatgtactacgatccggccaccgag
agcgtgctcgattaccacggcggcatcgacgatatccgcgccaagaccttgcgcatcatc
ggcgagccggaagcgcgcttccgcgaagatccgatacgcatgctgcgcatcgtgcgcttc
gccgccaagctcaagttcacgatcgatccggccacccgggcgccgatcccggtgatggcg
gcgctgatcgacaacgtgcctgcggcgcgggtgttcgacgaaatgctgaagctgctgatg
agcggccatgccctggcttgcctgcagcaattgcgcaaggaaggcctgcatcacggcctg
ctgcctttgctcgacgtggtgctggagcagccgctcggcgaaaaatttgtcacgctggcg
ctggccaataccgacgtccgcgtgcagcagggcaagccggtgtctcccgggttcctgttt
gcatcgctgttgtggcaccaggtgctggaaaaatggactgcctacaaggcggccggcgag
tttccgatcccggcgctgcacctggctgccgacgatgtgctggaagcccagaccgacaag
ctggccctgcaacgcaagatcgcttccgacatgcgcgatatctgggccatgcagccgcgc
ttcgagcgccgggccggcaaggcgccgtacaagctgctggaacacctgcgcttgcgcgcc
ggctacgacttcctgctgctgcgttgcgcctcgggcgagatcgacagcgaaatcggcgag
tggtggaccggcttcatggaaggcgacggcagcgagcgcgaattgctgctggcgcaaaag
ccgaaggttgccgccgaagccgcgcctgccaaaaaacgtccgcgccggcgcggttcgcgc
agcggcgccaagggtgtcaacaccggcagcagcgccggcggccgcggcaatgatgagcaa
ggtggtcaatga
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