Collimonas fungivorans: CFU_4364
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Entry
CFU_4364 CDS
T01583
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFU_4364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfu03000
]
CFU_4364
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_4364
Enzymes [BR:
cfu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
CFU_4364
Transcription factors [BR:
cfu03000
]
Prokaryotic type
Helix-turn-helix
AraC family
CFU_4364
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CFU_4364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
AEK64185
UniProt:
G0AEH7
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All DBs
Position
complement(5086216..5087685)
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AA seq
489 aa
AA seq
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MELDHDTCYRALASRDVRFDGRFFIGVKTTGIYCRPICPARTAKSENVLFFPTAAAAQEA
GFRPCLRCRPEAAPDSGAWRGVANSGVSNTVTRALALIEMGALDDNGMDALVARLGVGER
QLRRLFAQHLGASPVAVAQTRRVLLAQQLIHETRMPITEIAFAAGFGSVRRFNEVFQNLF
RRPPSALRHGSQPEQSAQAGVTLLLRYRPPYDWPAMLAFLSPRAIAGVELVADGCYYRSI
CLDGAHGTIVVQQGEGHALQATIRFPRLSSLSAIIARLRRMFDLAADPEIIGRQLSADPL
MARLTAARPGLRVPGCWDGFEQAMRAVLGQQITVLGAIRLAGKLVAQYGEALSDPCADRP
GLTHVFPQAAAVAAADLAPLGMPKTRAATLSAIAAALVADPQLLDTCVSLEEAVLKLRAL
PGIGDWTAQYMALRHLREPDAFPAADVALMHAIAVHEGARPNAKELTLRAEAWRPWRAYA
AQHLWSSLA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggaactcgatcacgacacctgctaccgggcgctggccagccgcgatgtacgctttgac
ggacgttttttcatcggcgtcaaaactaccggcatctattgccgtccgatttgccccgcg
cgtaccgccaaatccgaaaacgtcttgtttttccccaccgccgccgctgcacaggaagcg
ggttttcgtccatgcctgcgctgccgcccggaagctgcgcccgattccggcgcctggcgc
ggagttgccaacagcggcgtatccaataccgtgacgcgcgcactggcgctgatagaaatg
ggagcgctggacgacaatggcatggacgcgctggtcgcgcggctgggcgtgggcgaacgg
caactgcgccgcctgttcgcccagcatctgggagcgtcgccggttgccgtagcgcagacg
cgccgggtgctgctggcccagcagctgatccatgaaacccgcatgccgattaccgaaatc
gctttcgccgccgggtttggcagcgtccgccgtttcaacgaggtgttccaaaacctgttc
cggcgtccgcccagcgcattacgccatggcagccagccggaacaatcggcgcaagccgga
gtaacgctgttgctgcgttaccggccgccttacgactggcctgccatgctggcgttcctg
agcccgcgcgcgattgccggcgtggaactggtggcggacggctgttactaccgcagcatc
tgcctcgacggcgcgcatggaaccattgtcgtgcagcaaggcgagggccatgcccttcaa
gccaccatccgtttcccgcgattgtcgtcgttgtcagccatcattgcccgcctgcgccgg
atgttcgacctggcagccgatcccgaaatcatcggccgccagctgtcggccgatcccttg
atggccaggctcactgcagcccggcccggcctgcgcgtaccgggctgctgggacggtttc
gaacaggcgatgcgggcggtgctggggcagcagatcaccgtgctcggcgctatccggttg
gccggcaagctggtagcgcagtacggcgaagcgctcagcgatccttgcgcagaccggccg
gggctgacccacgtcttcccgcaagccgccgccgtggcagctgctgacctggcgccgctg
ggcatgccaaaaacgcgcgccgccaccttgtctgcgatagctgcagcgctggtggccgac
ccgcagttgctggatacctgcgtcagcctggaagaagcggtattgaaattgcgcgcattg
ccgggcatcggcgactggaccgcacaatacatggcgcttcgccatttacgtgagcccgat
gcgtttccggcggccgatgtggccttgatgcacgcgatcgcggttcatgaaggcgccagg
ccgaacgcaaaggaactgacgctgcgggcagaagcctggcggccgtggcgcgcttatgcg
gcacagcatctttggtcgtcgctggcctga
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