Choristoneura fumiferana (eastern spruce budworm): 141426610
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Entry
141426610 CDS
T11020
Name
(RefSeq) uncharacterized protein
KO
K06237
collagen type IV alpha
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04382
Cornified envelope formation
cfum04512
ECM-receptor interaction
cfum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141426610
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
141426610
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141426610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfum04147
]
141426610
00536 Glycosaminoglycan binding proteins [BR:
cfum00536
]
141426610
Exosome [BR:
cfum04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141426610
Glycosaminoglycan binding proteins [BR:
cfum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141426610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141426610
NCBI-ProteinID:
XP_073941737
LinkDB
All DBs
Position
3:11639147..11664084
Genome browser
AA seq
1849 aa
AA seq
DB search
MAVRLLCLVSALLSLIGVQTQENRYRDGYDINNVDSRPYNNEYARYNNRYNDWERRSDSR
PGYPYQQPQQWPPQPAPTAFRDPSARPDYTQYTEAQPLPEREEPTAPTPENSYPNYAIYD
PVTKQRTTLSSNCTSRSSCVPKCFAERGPRGPPGPRGNPGAPGLRGHEGAEGPQGPKGQK
GQIGPQGPVGPKGDRGKPGQQGFTGPTGPPGLQGEQGRMGERGVDGCNGTDGEPGPLGPK
GSQGPRGFPGSKGDKGDKGEAASVGSYPKGVKGEPGLEGLPGKVGPVGPPGPPGTPGLLG
RTGPMGPPGVPGQKGAKGSEGLSTPGDKGERGDKGDRGPACSGPPPTVIGPDKGFIKGIP
GERGDPGDKGEPGRFGDKGEMGPMGEPGRTGQAGMKGEKGIRGNPGERGRGGMFGASGPR
GQKGDRGNDGLLGLDGNPGRKGEPGTDGLPGPRGIKGIRGPPGGSTGSMTGPPGPVGPRG
YQGPQGPKGTDGRPGEKGDAGPMGPVGGQGIPGTPGREGPAGTKGEKGEQGVEGLPGNIG
PQGYPGTTGPTGLRGQKGESGTSIPGERGQNGLPGLYGQKGEKGERGYSGLRGAPGNSTF
GTPGIPGEVGPQGRKGDKGNPGFNGTPGTPGAKGDIGGRCNDCMPGAVGEKGDRGSDGLP
GARGDRGPQGPAGMPGERGSDGLDGLPGTPGEQGEQGDDGPTGPPGSRGSDAIIPSNLVK
GSQGEKGVRGYPGPRGPKGDRGRDGPTGERGHMGMPGQKGDQGFMGLPGVDGTPGMNGNP
GLPGEKGISVIGEKGTPGDRGFPGDKGFPGLLGEKGEPGTCPLYLKELTQGDRGAPGPAG
PQGPPGETGEKGDRGYPGQPGDKGEMGIQGRQGPVGPRGLTGMRGDKGEMGHMGFPGTSG
EPGPRGFSGVPGAKGDKGEFGPSMPGPPGLPGLRGLKGDQGPRGLNGIDGKDGAPGSIGF
QGEKGDQGLPGYTGPQGPEGPKGEPGPVGPAGIPGNPGIPGRNGPKGQTGYPGLPGKPGD
IGLPGRKGEIGIQGLDGLRGFPGSRGRPGAPGNPGVGGSPGEKGDKGELGYPGPPGLQGS
DGNMGPPGFPGQKGEQGYQGPQGPPGFEGLPGDKGDRGFTGPIGPQGLPGQASEKGQKGE
PGMPGLKGYDGAQGRDGAKGDKGNAGVPGRGLPGLPGPKGDAGVGGTNGYPGQPGTKGDR
GYSGRPGLKGDRGLPGQTGLPGMDGVAGLPGGPGDIGLPGPEGNKGDKGDIGLHGQDGLD
GPKGDRGPQGPPGLPGVRGYAGAKGDRGLPGVSLDIKGEKGDSGPQGITGRPGDKGDRGD
DGLPGLTGDKGERGYQGQKGSMGQMGDFGQKGDQGPAGPDGIPGLTIKGEKGLPGLPGKH
GTPGRQGAPGEKGDQGLTGLPGPSGTPGIPGAIGPQGEKGDQGNEGIAGPPGFDGTPGST
GAPGQQGAKGDKGDRGPTGFGLPGERGEPGRPGIQGVQGLQGDKGDRGLPGFNGQDGPIG
IRGEKGDLGFPGRIGLPGMEGMKGDKGEPASIVYGPRGETGPAGPPGLDGLPGKDGATGS
PGMDGIPGLKGDRGLPGPQGVMGPPGPEGLQGQEGEKGDIGLTGREGAPGIPGAPCTTTD
YLTGILLVKHSQSEQIPTCEPGHTELWHGYSLVYIDGNEKAHNQDLGFAGSCVRKFSTMP
FLFCDMYDTCNYASRNDRSYWLSTGEPILMMPTTGRNIERYISRCVVCEVPTNVIAVHSQ
SLNNPDCPSGWSTLWWGYSFVMHTGAGAQGGGQALASPGSCLQDFRATPLIECNGAGGAC
QHFANLLSFWLTPIEEQFGEPTKQTLKKDSPNPPRQFVSRCAVCIKNTT
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggcggtccgcttgttgtgtttggtgtccgcgctgttgtcgctcattggagttcaaaca
caagaaaataggtatcgggatgggtacgacatcaacaatgtagactcgaggccgtacaac
aacgaatacgcacgatacaacaatcgttacaacgactgggaaagaaggagtgactcgcgg
ccgggctacccataccagcagccgcagcaatggccgccgcagcctgcgccgacagcgttt
cgggatccatcggcaagacccgactacacgcagtacacggaggcacagccactacctgaa
cgtgaagagccgacagcgccaacaccagaaaacagctaccctaactacgctatttacgac
ccagtgaccaaacagcgcacaaccttgtccagtaattgcacgtctcgaagctcctgcgtg
ccaaaatgtttcgctgaaaggggtcccaggggacctccaggtccgaggggcaaccctggg
gctccaggtttgcgtggccacgaaggagcagagggtccacaaggtccaaaaggtcagaaa
ggtcaaatcgggccacaaggtcccgttggtcctaaaggtgacaggggtaaacctggacaa
caaggatttactggtccaactggccctcctggtcttcagggtgaacaagggagaatgggt
gagcgtggtgtcgatggctgcaatggtactgacggcgaacctggaccacttggaccaaaa
ggatcacagggtccccgtggatttcccggtagcaaaggagataaaggtgacaaaggagag
gcagcatctgtgggaagttatccgaagggtgtaaaaggagagcctggtctagaagggttg
ccagggaaggttgggcccgtcgggcctcctggaccgcctggcacgcctggacttttggga
agaactggacccatgggtccgccaggggtaccaggacaaaagggtgctaagggttcggaa
ggtttatccacaccaggtgataaaggagagagaggtgataaaggtgatagaggaccagcc
tgctcaggtccgccgcctaccgtgattgggccagataaaggtttcatcaaagggattcca
ggagaaaggggcgacccaggggataaaggtgaaccgggtcgttttggtgacaagggtgaa
atgggacctatgggtgaaccagggcgcacaggtcaagctggaatgaaaggagaaaagggc
atacgaggaaatcctggtgaacgaggtcgaggtggtatgtttggtgcgtctggaccacga
ggacagaaaggtgatagaggcaatgatggcttactgggtcttgacggtaaccccggcagg
aagggagaacccggaacggatggattgcctggtcctagaggaataaaaggaattcgcggt
cctcccggcggcagtacgggatctatgaccggcccccctggcccagtgggaccacgaggg
taccagggcccacagggtccaaagggaaccgacggaagacctggagagaaaggggatgcc
ggcccaatgggcccagtaggtggacagggtatacccggtacaccagggcgagagggtcct
gctggaactaagggagaaaaaggtgaacaaggggtagaaggcctaccaggaaatattgga
ccacagggatacccaggaacaacagggccaacaggcttgagggggcaaaagggcgaaagt
ggcacatcaatccctggtgaaagaggacaaaatggcttacccgggctatatggccagaaa
ggtgaaaagggcgaaagaggatacagtggtttaagaggagctcccggaaattcaacattt
ggaactccaggaatcccaggagaagtaggaccacagggaagaaaaggtgataaaggtaac
ccgggtttcaatggcacgccgggcacaccgggagctaagggagacataggtggacgttgc
aacgattgtatgcctggggcagtgggcgagaagggcgaccgagggtctgatggcttaccc
ggagctcgcggggacagaggcccgcaaggacctgctggaatgcctggcgaacgtggcagt
gatggacttgacggcctgccgggaacacctggagaacagggagagcaaggtgacgacggc
ccaacaggacctccgggaagtcgcggaagtgacgcaataataccatcaaatttagtcaaa
ggatctcaaggagaaaagggagttcgaggatacccaggtccaagaggtccaaagggtgac
cgaggtcgtgatggccctacaggcgagcgaggtcatatgggtatgccaggtcaaaaagga
gatcaaggcttcatgggcctgcccggagtagatggcacacccggaatgaatggaaatcct
ggattacccggagaaaaaggaatctctgtgataggtgaaaaaggcacaccgggagacaga
gggtttccaggagataaaggctttccaggtcttttaggggaaaaaggtgaacccggaacg
tgtccactctatctaaaggaactaacacaaggagaccgaggagctccgggaccagctgga
ccacagggacctccgggagaaactggtgagaagggtgatcgaggttacccaggtcaacct
ggggataaaggtgaaatgggtattcaaggcagacaaggaccggttggaccacgagggctt
actggtatgagaggcgacaaaggagaaatggggcatatgggctttccaggcacatcaggc
gaaccaggaccaagaggtttttcaggtgttccaggcgctaaaggcgataaaggagaattc
gggccatccatgccaggtcccccggggctaccagggttgagggggttaaagggagaccaa
ggcccaagaggcttaaatggaatcgatgggaaagatggagctccaggaagtataggtttc
caaggtgaaaaaggagatcagggattaccaggatataccggcccacaaggtccagaagga
ccaaaaggagagcctggtcctgtaggacctgctggaataccaggaaaccctggaatacct
ggcagaaatgggcctaaaggacaaactggatatccgggattacctggtaaacccggagat
attggactgcctggtcgtaaaggtgaaataggaatacaaggacttgatggactcagggga
tttcctggtagtcgaggccgacctggagctccgggtaatcctggtgtcggtggatctcca
ggagaaaagggtgacaaaggagaacttggatatcctggtcccccaggcctgcagggttca
gatggtaacatggggcctcctggttttcctggacaaaaaggagagcaaggttatcaaggg
ccacaagggccaccgggatttgagggtttgccaggagacaagggagacaggggttttact
ggtccaataggtccccaaggattacctggtcaagcgtctgaaaaaggacaaaaaggagag
cccggtatgcctggtttaaaaggatacgatggagctcaaggcagagatggagctaaaggt
gataaaggtaacgcaggcgttcctggacgtggattacctggactcccaggaccaaaggga
gatgccggtgtagggggcactaacggatatcccggacagccaggcacaaaaggtgatcgt
ggatactctggacgaccaggacttaaaggcgatagaggcttacctggtcagacaggccta
ccaggcatggatggtgtcgccggattgccaggaggacccggtgatattggattaccagga
ccagaaggtaacaaaggggacaaaggcgatattggattacatggacaagatggtttagat
ggaccaaagggagatagaggtccacaaggtccgcctggtttgcctggagttagaggttac
gctggtgcaaaaggagatagaggtctgccgggtgtatcactagatataaaaggagaaaaa
ggagatagcggtccacaaggtataacaggccgaccaggagacaaaggtgacagaggtgat
gacgggcttcctggcttaactggcgacaaaggagaacgtggttaccaagggcaaaaggga
tcaatgggtcaaatgggagactttggacaaaaaggtgatcaaggcccggccgggcccgat
ggaattcccggattaacaataaagggagagaagggtttacctggtttaccaggcaaacat
ggtacaccaggaagacaaggtgcacccggcgaaaaaggtgaccaagggttaacgggtctt
cctggtccatcaggtacgcctgggattcctggtgctattggacctcagggtgaaaagggc
gatcagggtaatgaaggcatcgcaggaccaccaggttttgatggaactccaggctcaacg
ggtgctcctggtcaacaaggcgctaaaggtgataaaggtgatagaggccctacaggattt
ggtttgcctggtgaaaggggtgagccaggtcgacccggaatacaaggagttcaaggatta
caaggtgataaaggtgatcgaggtttgccaggattcaatggacaagatggaccaatagga
atacgtggtgaaaaaggtgatctaggatttcctggaagaattggtttaccaggaatggaa
ggtatgaaaggtgataaaggagaaccagcatctattgtatatggacctagaggagagact
ggaccggcgggtcctccaggacttgatggtttgcctggtaaagatggggccacaggatcg
ccaggcatggatggcataccaggactcaagggtgaccgtggtctacctggtcctcaagga
gtcatggggccgcccggtcccgaaggacttcaaggacaggaaggtgaaaaaggagacata
ggtctgacgggacgagagggagcaccgggtattcctggagcaccgtgtacaactactgac
tacttgactggaattcttttagtgaaacacagtcaaagtgaacaaattcctacatgtgaa
ccagggcacacggagctttggcatggatattctcttgtttacatagacggtaacgaaaaa
gcccataatcaagatttagggtttgctggttcatgcgtaagaaaattcagtaccatgcca
ttcctgttttgtgatatgtatgatacttgtaattatgccagtcgaaacgaccgcagctat
tggctatcaactggggagccaattttaatgatgcctactactggaagaaatattgaaagg
tatatttcaagatgtgtggtctgtgaagtacctacgaatgtcatagctgtccatagccag
tcattgaataatccagactgtccatcaggatggagcacactctggtggggatacagtttt
gttatgcacactggcgcaggtgcacaaggaggcgggcaagctctggccagccccggctcg
tgtctgcaagacttccgtgccactcctctcatcgaatgcaacggggcgggcggcgcttgc
cagcacttcgccaatttactcagcttctggctcacacccatcgaagaacaattcggggag
ccaacgaaacagacgctcaaaaaagatagcccgaatcccccgagacaatttgtctctcgg
tgcgccgtgtgtattaaaaacaccacgtaa
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