KEGG   Choristoneura fumiferana (eastern spruce budworm): 141426611
Entry
141426611         CDS       T11020                                 
Symbol
vkg
Name
(RefSeq) collagen alpha-1(IV) chain viking
  KO
K06237  collagen type IV alpha
Organism
cfum  Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04382  Cornified envelope formation
cfum04512  ECM-receptor interaction
cfum04518  Integrin signaling
cfum04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cfum00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    141426611 (vkg)
   04518 Integrin signaling
    141426611 (vkg)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    141426611 (vkg)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    141426611 (vkg)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cfum04147]
    141426611 (vkg)
   00536 Glycosaminoglycan binding proteins [BR:cfum00536]
    141426611 (vkg)
Exosome [BR:cfum04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   141426611 (vkg)
Glycosaminoglycan binding proteins [BR:cfum00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   141426611 (vkg)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 141426611
NCBI-ProteinID: XP_073941738
LinkDB
Position
3
AA seq 1804 aa
MSGPARARLRVLHLAPFAFLLISTFAPSSAVVCNQTACEGACIGIKGDRGRPGSIGLPGP
QGDYGEDGPEGRMGLPGEYGEDGQYGDMGDKGERGADGPYGPTGFAGPEGFRGLEGIAGL
PGIDGCSGHDGVQGPTGFQGYPGDRGVPGPYGEKGMRGLAGEGGANSRGTKGDTGNTGAP
GPSGLRGPAGYAGDNGPRGEEGYQGPMGVSGALGPRGAPGDDVLGPPGDKGEKGFLGEPG
ITTKVVLIDIFSENVTIVSKGNKGAKGFSGAPGIKGARGEIGSRGLPGPNGIRGNQGYKG
DEGEQGPRGKPGRRGPDGPEGPKGDKGAPGYAGQDGRHGLDGERGEDGRDGNPGEQGPQG
DKGFYDETLNEPLRQGSQGPQGPLGYPGTIGEPGIDGARGPPGNVGPVGLPGPKGFPGRQ
GNPGISPKGEPGDRGYPGALGPRGIPGNPGLQGDAGPKGFKGNTVKGEPGEDGIPGQDGL
PGLRGNIGDTGLTGPPGYPGTGIHGAGPPGDDGLPGRPGLTGDPGTPGFQGYPGPKGIRG
DNCPYCAPGYPGRKGQRGDQGFPGVAGEPGFSGLPGPRGQLGLPGVPGRRGQKGMTGVKG
LTGNPGPEGPKGQPGKLIEPPFDQKRADPGLPGDTGFIGEPGIIGDPGWPGLRGPDGPIG
IKGPIGDYGLPGLPGLNGSRGRDGAPGRPGENAYAPIHFYRGEKGDAGPKGVAGAPGEPG
IKGDNGDAIDNDLNVKGVRGPPGPTGLKGFRGRKGDRGDQGYAGFGGIKGDQGLPGLSLP
GPMGIKGIAGEKGNNGPFGEPGSPGRIGPKGYDAPRGQKGSRGEAGFPNIPGERGIDGEK
GEAGDIGEPGFPGLSGHPGPIGPKGIQGIPGDNGPYGSMGPAGRKGKQGLIVQGAPGMPG
QPGQPGLFGVIGDQGLKGRQGLDGDSGPKGPKGEPGRQGYRGLSGEPGKPGVKGFPGMIG
KPGAPGESGDQGDTGSPGLFGLSGLPGVQGPRGLQGIRGENGSIGFSGLPGSTGIKGQRG
DQGFMGQQGLPGDDAFSGDKGDFGEPGIIGFPGNPGFDGLEGLKGDDGDLGEDIYGRTGP
KGEIGNPGVFGLPGVPGTKGEQGDDGEDGPFGKTGDKGFPGQPGRPGKPGFYGAKGNQGL
RGFAGNPGKKGDYGMDGTPGRMGLPGIPGDQGFQGEIGTTGDIGIKGIRGDQGYTIPITG
TKGDMGDFGPDGFPGSRGFSGEPGFRGLKGSQGDRGDIGFQGSYGDKGLPGLKGMVGDRG
APGLRGLDGINAEQGEAGRPGFNGLNGWPGPMGQKGAPGEYGLDGPVGLPGQQGLVFEGP
KGIKGNMGRMGNRGQHGAPGRIGMPGIPGLTGRRGDIGEPGLAISPKGMTGQPGWPGEVG
LKGNKGEQGEPGQNGLRGNQGQRGLKGYAGERGQDGAEGYLGPKGVKGDVGEAIFASEIT
PGPKGYRGVQGTPGKDGIDGRPGAFGRNGLPGLKGEIGDMGFAGFEGLPGSRGRVGRRGF
RGMQGDQGQRGATGAPGLPAPPPPVPKSRGYFFVMHSQSSMIPRCPAGTAPMWEGFSFMH
IVANGKAHGQDLGAAGSCLRRFSTMPYMFCNFNEVCDFAQREDYSFWLSTSEPMPMQMTP
IVARNVGPYISRCQVCETPTRAIALHSQGTEVPTCPNGWEELWNGYSFLMHTAGTDAAGQ
SLISPGSCLKEFRTRPAIECNGLGRCNYFAMGVSFWMSIIDDNEMFSKPRQQTIKKDQDQ
LSTVSRCTVCRKQWPTSSQTGYQRPDIRYVPSAVSRSSQYPPRGRQNGYRYNRRNRLARG
RRRP
NT seq 5415 nt   +upstreamnt  +downstreamnt
atgtcgggcccggcgcgtgcgcgactccgagttctgcatctcgcgcccttcgcgttcttg
ctcatctccaccttcgctccaagctccgcagtagtatgcaaccaaacagcatgcgagggg
gcctgtatcggtataaaaggggacaggggtcgcccgggcagcatagggcttccaggcccc
caaggcgactacggtgaggacggaccagagggccgaatggggctcccaggagaatatggt
gaagatggacaatatggtgatatgggagataaaggagagcggggtgcggatggaccgtac
gggccaacgggatttgctggtccagaaggattccgaggcttggaaggtatcgctggctta
ccaggaatagatggctgcagcggccatgacggtgttcagggaccaactgggtttcaaggt
tatcctggagatagaggagtacctggaccttatggtgaaaaaggcatgcgagggttagct
ggagaaggtggcgccaattcgagaggtacgaaaggagacacaggcaacaccggtgctcca
gggccatctggtttacgagggccggcaggttatgcaggagataatggtccacgaggagag
gaaggttaccagggtccaatgggggtaagtggtgcactcggacctagaggagcaccaggc
gacgatgtcttagggcctcctggagataaaggagagaaaggtttcttaggtgaacccgga
atcacaacgaaagtagtgttaatcgacatatttagcgaaaatgtaaccattgtatcgaaa
ggaaacaaaggcgctaaaggatttagtggggcaccaggcattaaaggagcacgaggtgaa
attggctcgagggggttgcccggtcccaatggtatacgcgggaatcaaggttacaaaggt
gacgaaggtgaacaagggcctaggggaaaacctggacgcagagggcccgatggtccagaa
ggtccgaaaggagataagggcgccccaggttacgcgggacaggatggacgccatggttta
gatggcgaacgaggagaagacggaagagatggcaatccgggagaacaaggaccacaaggc
gataaaggattttacgatgaaactctaaacgagccgctgagacaaggttcacaaggacct
caaggaccgttaggttatcctgggactattggtgaaccaggaatagatggtgcacgcggt
ccacctggaaacgtagggcccgtcggcttgccaggtcctaaaggttttcctggccgccaa
ggtaaccctggaatctctcctaaaggtgaaccaggtgatcgtggctatccaggcgcgctt
ggtcctcgaggtatcccgggtaaccccggtttgcagggagatgcaggaccgaaaggtttc
aaaggcaatacagtaaaaggtgaaccaggggaagatggcatacccggtcaagatggtctc
cctggactacgtggcaacattggtgataccggattaacgggccctcctggatacccagga
actggaattcacggtgcaggcccaccaggagatgacggtctacctgggcggcctggattg
acgggcgatccaggtaccccgggattccaagggtaccctggaccgaagggaatacgcggt
gataattgtccatactgcgctcctggttatcctggtcgcaagggtcaaagaggtgaccag
ggcttccctggtgtggctggtgaaccaggtttttcaggattaccaggtcctcgtggccag
ctgggccttcctggtgtgcctggtcggcgaggtcaaaaaggcatgactggagttaaaggt
ttaacagggaaccctgggccggagggtccaaaagggcagcctggaaaacttattgaaccg
ccattcgaccaaaaacgtgcggaccctggacttccgggtgacacaggatttataggggag
cccggtattatcggcgaccctggctggccaggattgcgagggccagacgggcccataggt
atcaagggaccaataggcgattacggattaccaggtctgcctgggttgaatggctcacga
gggcgggacggggcccccggccgacccggcgagaacgcttatgctccgattcacttttac
cgaggagaaaaaggagacgctggtcctaagggtgtagcaggtgcccctggtgagccagga
ataaaaggagacaatggagatgctattgacaatgatttaaacgtcaagggagtcagaggt
cccccaggacctacaggactaaaaggattccgcggcagaaagggcgaccgaggtgatcaa
ggttacgccggatttggcggaataaagggtgaccaaggtctgcctggattaagtcttcca
ggtccaatgggtataaaaggaatagccggagaaaaaggaaataatggaccttttggtgag
ccaggcagcccaggaagaataggcccaaaaggttatgatgcaccaagaggacagaaggga
tctcgtggtgaagccggttttcccaacataccaggagaaagaggaattgatggcgaaaaa
ggcgaagctggtgacattggagaaccaggctttccaggactatcaggtcaccctggccct
ataggtccaaagggaattcaggggatccccggagataatggtccatatgggtcaatgggt
ccagcaggacgtaaaggaaaacaaggtttaatagttcaaggtgcccctggaatgcccggg
cagccaggtcagccaggtctcttcggagtaataggagaccaagggctaaaaggccgtcag
ggattagacggtgactccggtcctaaaggaccaaagggagagcctggccggcaagggtac
cgaggccttagcggcgaacccggaaagcctggtgtaaagggcttcccaggtatgatcggc
aaacctggagcccccggagaatcaggagatcaaggtgacacaggaagccctgggttattc
ggattatcgggcctccccggagtgcaaggaccacgaggacttcaaggaattcgtggcgaa
aacggaagtataggtttctctggattaccaggttcgacgggcattaaaggacagagagga
gatcaaggttttatgggacaacaaggattgccaggagatgatgcttttagcggggataaa
ggagacttcggggaaccaggcataattggcttcccaggtaacccaggttttgatggttta
gaagggcttaaaggtgatgatggagatttgggtgaagacatctacggtaggactggccct
aagggtgaaataggtaaccctggggtatttggactgcctggagttcctggaaccaaaggc
gagcaaggcgatgatggtgaagacggcccatttggtaaaactggagataaaggattccca
ggtcaaccaggacggcctggtaagcctggtttctacggtgctaaaggaaatcaaggttta
agaggattcgctggaaacccaggcaaaaagggtgattacgggatggacgggactcccggg
cgaatgggattacctggtattcctggagaccagggttttcaaggagaaataggaactacg
ggggatataggaattaagggtataagaggtgaccaaggttatacaattcccataacaggc
actaaaggagacatgggcgactttggaccggacggttttcctggtagtcgcggcttttct
ggagagcctggttttcgtgggttaaaaggctctcaaggagacagaggagatattggtttt
caaggaagttatggagataaaggtttacctggtttaaagggaatggttggtgatcgaggc
gctccgggattacgtggattagatggaataaatgcagaacaaggagaagctggtcgccct
ggttttaatggacttaatggctggcctgggccgatgggtcaaaaaggtgctccgggtgaa
tatggattggacggtcctgtaggtttgccgggtcagcaaggtctagttttcgaaggtcca
aaaggaataaaaggcaatatgggcaggatgggtaaccgaggacaacatggagctcccggg
cgtataggaatgccaggaattccgggcctaactggccgtagaggagacataggtgaacct
ggacttgcaataagccctaaaggtatgacgggacagcctggttggcctggcgaagtgggg
ctaaaaggcaataaaggagaacaaggagaacctggtcaaaatggtttacgtggaaatcaa
gggcaacgaggtttaaaaggatacgctggagaaagaggtcaagacggtgcagaaggttat
ctaggtcctaaaggggtaaaaggagatgtgggcgaggctatttttgcttcggaaattaca
ccggggccgaaaggttatagaggtgttcagggcactccaggaaaggacggaattgacgga
cgtcctggagcatttggtaggaatggtctcccggggcttaagggagaaatcggagatatg
ggcttcgctggctttgaaggcctgcctggaagcagggggcgtgtaggacgaagaggcttt
cgtggtatgcaaggcgatcaaggtcaacgcggtgctacaggagcgcccggtttgccagcg
cctccaccacctgtgccgaagtcaagaggctatttctttgttatgcattcacaaagcagc
atgattccacgatgcccggctggtacggcaccgatgtgggaagggttctccttcatgcat
attgttgcgaacggcaaagcacatggacaagacttaggtgccgcgggaagctgcctgcgt
cggttctccacaatgccttatatgttctgcaattttaacgaagtttgcgattttgctcaa
cgcgaggactacagtttctggttgtcgacttcggaacccatgcctatgcaaatgacccct
atcgtagctcgaaatgttggaccatacatatcacggtgtcaagtgtgtgaaacaccaaca
agagcgatcgcgttgcacagtcaaggtaccgaagtgcctacctgtccaaatgggtgggag
gagctatggaacggatacagtttcttgatgcacacagcgggcacggacgcagcaggtcaa
agtttaatatcccctggatcatgtcttaaggagttccgtactagaccggccatcgagtgt
aatggcttaggccgctgcaactactttgcgatgggagtatcattctggatgtccataatc
gacgacaacgagatgttctcaaaaccaagacagcagacgattaaaaaagatcaagaccaa
ttatccactgtcagcaggtgtaccgtatgcagaaaacagtggcccacctcgagtcaaacc
gggtatcagaggcctgacatccgctatgtacctagcgcagtgagtcggtcatcgcagtac
ccaccaagaggccggcagaacgggtaccggtacaacagaaggaatcggctcgcccgcggc
cgccgccgcccgtga

DBGET integrated database retrieval system