Choristoneura fumiferana (eastern spruce budworm): 141426685
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Entry
141426685 CDS
T11020
Symbol
l(2)37Cb
Name
(RefSeq) DEAH-box helicase 16 lethal (2) 37Cb
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141426685 (l(2)37Cb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141426685 (l(2)37Cb)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141426685 (l(2)37Cb)
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141426685 (l(2)37Cb)
Complex C
U4/U6.U5 tri-SnRNP related factors
141426685 (l(2)37Cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
AAA_30
T2SSE
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141426685
NCBI-ProteinID:
XP_073941888
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All DBs
Position
3:complement(14318135..14322753)
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AA seq
885 aa
AA seq
DB search
MSTGKRRYSSSGSDSAEETRKKDLKERDEFATRLKKRDEQRVKKVAESSSKRSYEEAAKR
LKLEAEDRDKLLPKLRVQSRRKYLEKRKDDKVVELEADIADDEYLFDENILTEREKKERE
HKKTILQLAKEHEKARELENVQRYHMPRDLGKGEKGEYIEVDDNEKLPHSEQRKWEQEQI
KSAFFKFGAKDAKAQNEYELLLDEQIDFIQALQLEGTKEKKEEKEKSEYQKMRMTIEETK
ISLPVYPFKEALIEAIRNYQILIVEGETGSGKTTQIPQYLHEAGFTDDGKKIGCTQPRRV
AAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLASYSV
MIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSNFFDEAPIFRIPGRR
FPVDIYYTKAPEADYIDACVVSVLQIHATQPLGDVLVFLTGQEEIETCVEMLQERTKRLG
KKIRELIILPVYANLPSDMQAKIFEQTPEGARKVVLATNIAETSLTIDNIIYVIDPGFAK
QNNFNSKTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEIQ
RINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRMA
EFPTDPMLAKMLLASEKYKCSEEVVTIAAMLSVNSSVFYRPKDKIIHADTARKNFFHPSG
DHLTLMNVYNQWVESDFSVQWCYENFIQYRSMKRARDVREQLAGLMDRVEIEMVSSISED
ANIRKAITAGYFYHIAKFSKGGNYKTVKHNQTVMIHPNSALFEELPRWVIYHELVFTSKE
FMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTVGKSANSQ
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgagtactggtaagcgtcgatattcatcctctggcagcgacagcgctgaggagacgcga
aaaaaagatctgaaagagcgagatgagtttgctactcgacttaagaaacgtgatgaacag
agagtcaagaaggtagctgaaagttccagtaagaggtcttatgaagaagctgctaaacgc
cttaagctcgaagccgaggacagagacaaattgctcccgaaattgcgagtgcagtcgcga
cgcaagtatctagagaagaggaaagacgacaaagtcgtcgaactcgaggctgacatcgcc
gacgatgaatacctcttcgatgaaaacatattaacagaaagagagaaaaaagagagagaa
cacaaaaaaactattttgcaacttgccaaggaacatgaaaaagctagagaactggagaat
gttcaaagataccacatgccacgagacttgggtaaaggagaaaaaggagaatatattgaa
gttgatgacaatgaaaagcttcctcactctgaacaacggaagtgggagcaagaacaaatt
aagtctgcattcttcaagtttggtgccaaagatgccaaggcacaaaatgaatatgaactg
ctcttggatgaacagattgactttatacaagctctacaacttgaaggcaccaaagaaaag
aaagaagaaaaagaaaaatcagagtatcaaaagatgcgcatgacaattgaagaaacaaaa
atatccctgcctgtgtacccctttaaagaagccttaatagaggctatcagaaattaccag
attttaattgtagaaggtgaaactggttcaggtaaaacaacacaaataccacagtatttg
catgaagctggttttactgatgatggaaaaaagattgggtgcacacagcctcgtcgagtg
gctgccatgtctgtagctgccagagtagcccaggaaatgaatgtcaaacttggaaatgag
gttggatatagcatacgtttcgaagactgcacatcagatagaactgtcataaaatacatg
acagatggtacactacacagggaatttctatctgagccagatctggcttcatacagtgtg
atgattattgatgaagctcatgagcgtacattacatacagacattttatttggacttgtg
aaggacataacaagattcagaccagatttaaaattactaatatcaagtgcaacattggat
gcagaaaaattttcgaacttttttgatgaggcacctatattcagaattccaggaagaagg
tttcctgttgatatttactacaccaaagcgccagaggctgattatattgatgcttgtgtg
gtatcagttttgcagattcatgctactcaacctcttggagacgttctagttttccttaca
ggacaagaggaaatcgaaacttgcgtggaaatgctacaagagagaacaaaacgcctaggg
aagaaaatacgagaacttattattttacctgtttatgctaatctgcccagtgacatgcag
gccaagatctttgagcaaactccagaaggggctcgcaaagtggttttagccactaatatt
gcagagacatcactgacaattgacaatatcatttatgttatagaccctggctttgccaaa
cagaacaatttcaattctaagactggtatggaaagtcttatagtagtcccaatctctaag
gcatctgccaaccagagagcaggcagagctggcagagttgcaccagggaaatgcttcagg
ctctacactgcctgggcctacaagtatgaactggaagataacactgtccctgaaattcaa
aggattaacttgggaaatgctgttctcaccttgaaggctctagggatcaatgaccttatc
cactttgattttctcgaccctcccccgcatgaaacacttgtattagctttagagcaactg
tatgctcttggggcccttaatcatcatggggaattgacaaaagctggcagacgaatggca
gaatttcccacagatccaatgctagcaaaaatgttattagcaagtgaaaagtacaaatgt
tcagaagaagttgtcacaatagctgcaatgttgtctgtcaacagttcagttttctacaga
cctaaagacaagataattcatgctgacactgccagaaagaactttttccatccctcggga
gatcacttgacattaatgaatgtatacaatcaatgggtagagtcagacttctcagtacag
tggtgctatgagaattttatccaatacagatcaatgaaaagagctcgagatgtgagagaa
caactagcaggtctcatggaccgtgtagagattgaaatggtttccagcatatctgaagat
gctaatataaggaaagctataactgctggatacttttaccatattgcaaagttttcaaaa
ggtggtaactacaaaacagtaaaacacaatcaaacagtaatgattcatcctaacagtgct
ctttttgaagaactgcctcgctgggtcatatatcatgagcttgtgttcacatcaaaagaa
tttatgcgacaagtaacagaaattgaaagcaagtggctattagaggtagctcctcactac
tacaaatctaaagaacttgaagactccactaacaaaaaaatgccaaaaacagttggtaaa
tctgctaatagccaataa
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