Choristoneura fumiferana (eastern spruce budworm): 141426775
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Entry
141426775 CDS
T11020
Symbol
Polr2B
Name
(RefSeq) RNA polymerase II subunit RpII140
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03020
RNA polymerase
cfum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141426775 (Polr2B)
09124 Replication and repair
03420 Nucleotide excision repair
141426775 (Polr2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141426775 (Polr2B)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141426775 (Polr2B)
Enzymes [BR:
cfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141426775 (Polr2B)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
141426775 (Polr2B)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
141426775 (Polr2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
141426775
NCBI-ProteinID:
XP_073942040
LinkDB
All DBs
Position
3:16378682..16382426
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDTEDDQYEEEDVEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHSSGEIEVPPKYLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQGVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKKHIDSLKERDYNNYGWQNLVASG
VVEYIDTLEEETVMIAMSPDDLAQIKEYAYCSTYSHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDEDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatacagaagacgatcaatacgaggaagaagatgtggaagaaatttcatccgag
ctttggcaggaagcctgctggattgtcatcaacgcatactttgatgagaaaggtttggta
cggcagcagttagacagctttgatgagttcattcaaatgtctgtacagcgtattgtagaa
gactcaccacctattgaattacaagcggaagcacaacattcttctggtgaaatagaagta
ccaccgaaatatctgcttaaattcgatcaaatttatctctccaaacctacacattgggag
aaagatggtgcaccatcaccaatgatgccaaatgaagctagacttcgtaatttgacgtat
tctgcgcctctttatgttgatataactaaaacgattgtaaaagaaaatgaagatcctatt
gaaacacagcatcaaaagacatttattggtaaaatcccaattatgctgcgatcaacttac
tgtttgctgagtaatctaactgacagagatttgacagagttgaatgagtgcccccttgat
cctggtggctatttcattattaacggctcagaaaaagtgttaattgcacaggaaaaaatg
gccactaacactgtatatgtatttagtatgaaggatggaaagtatgcttataaaaccgag
ataagatcatgtctagagcatagctcaagaccaacatccacattgtgggtcaatatgatg
gctcgaggtggtcaaagtatcaaaaaatctgctattgggcaaaggataattgctattgta
ccttacattaaacaagagatacctattatgatagtattccgagcactgggctttgtagca
gatagagatattttagaacacattatctatgactttgatgatcctgaaatgatggagatg
gtgaaaccgtcactggatgaagcttttgttattcaagaacaaggtgtagcactcaatttc
attggatcccgtggagctcgaccaggagtcacaaaggaaaagaggataaagtatgcaaga
gaaattttacagaaagagatgttgccgcatgttggtgtttctgacttctgtgagactaaa
aaagcatatttcctgggttacatggtgcataggctcttgttagctgcacttggtcgtcga
gaattagatgacagagatcactatggaaataaaagattggatttagctggtcccctgttg
gcattcttgttcagaggattattcaaaaacttgttgaaggaagtccgtatgtatgcacaa
aaattcattgacagaggaaaagactttaacttggagctggctatcaaaacaaaaattata
acagatggccttagatattcccttgctacaggaaactggggagatcagaaaaaagcccat
caagctagggctggtgtctctcaagtattgaacaggttaactttcgcgtcaactctgtcc
catttgcgacgcgtgaactcgcctatcggacgtgacggtaaactagctaaaccccgtcag
ttacataatacactatggggcatgatttgtcctgcagaaactcctgagggagctgctgtg
ggccttgtgaaaaatcttgcactgatggcttacatttctgttggaagccagccatctcca
attttggagttcttggaagaatggtccatggaaaatttggaggaaatagcaccttcagcc
attgctgatgctacaaaaatatttgtcaatggatgctgggtcggaattcatcgagaccct
gaacagttgatggcaacattgcgcaagcttcgacgacaaatggatattatagtttcagaa
gtgagcatgattcgagacataagagacagggaaatccgtatatatactgacgcaggcagg
atttgccgccctctcttgattgtagagaatggcacattattgctcaagaaaaagcacatt
gacagcctcaaagagagagattacaacaactatggttggcagaatctagttgccagtgga
gttgttgaatatattgacactttagaagaagaaactgtcatgattgccatgagtccagat
gatttggcacaaataaaagaatatgcatattgttctacatattcccattgtgaaattcac
cccgcaatgatattgggagtgtgtgcctcaattattccatttcctgatcacaaccaaagt
cctaggaacacttaccaaagtgccatgggtaaacaggctatgggagtttacattactaac
ttccatgttagaatggacactctggctcatgtcttatactatccgcataaaccactggtc
acaacacggtccatggagtacctgcgattcagagaattaccagctgggatcaattcaatt
gtggcaattttatgctatactgggtataaccaagaagacagtgtcatcttgaatgcatca
gctgtagaacggggtttcttccgatctgttttttaccgttcttataaagattctgaatca
aaacgcattggtgaccaagaagaacaatttgagaaaccaacacgacaaacatgccagggc
atgagaaatgctctgtacgacaaactagatgaagatggaataattgcgccagggattcgc
gtatcaggagatgacgtggtgatcggaaaaacaattacgttaccagaaaatgatgatgag
ttggagggtacaaccaaacgctattcaaaacgtgatgcttcgacattcttacgtaacagt
gaaactggaatcgtagatcaagtcatgctaacattaaacagcgaaggatacaagttctgt
aaaattcgcgtaagatctgtacgaattcctcaaatcggtgacaagtttgcttcgcgacat
ggccaaaagggtacatgtggaatacagtacaggcaggaagatatgccttttacttgtgaa
ggtctaacacctgacatcattattaacccccacgctatcccgtcccgtatgacaattggg
catttaattgaatgtatccaagggaaagtgtcttccaacaagggtgaaattggcgatgct
actccgtttaacgacgcagtaaacgtacagaaaatatcttcacttctacaagaatacggc
tatcacttgcgaggaaatgaggtcatgtataatggtcacacgggtagaaaaattaatgca
caagttttcttaggccccacatactatcagcgcctgaaacacatggtcgacgacaaaata
cactctagggctagaggccctgtacagattttagtgcgtcagcctatggaggggagagca
agagacggaggcttgcgtttcggtgaaatggaacgcgattgccaaattgctcatggcgca
gctcaatttttgcgcgaacgtctgtttgaggtctctgatccttaccgcatacacgtttgc
aacttctgcggtttgattgcaatagctaaccttcgcaataatacatttgagtgcaagggc
tgtaaaaataaaactcaaatttcgcagatccgtttaccgtatgctgccaaattattgttc
caggagctaatgtctatgaacattgccccaagattgatggtcgtgagctag
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