Choristoneura fumiferana (eastern spruce budworm): 141426776
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Entry
141426776 CDS
T11020
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor SYF1 fand
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141426776 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141426776 (fand)
03041 Spliceosome [BR:
cfum03041
]
141426776 (fand)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141426776 (fand)
Spliceosome [BR:
cfum03041
]
Complex B
Other components
Prp19-related factors
141426776 (fand)
Complex C
141426776 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
NRDE-2
Mad3_BUB1_I
TPR_10
DHR-2_Lobe_A
PPR
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
141426776
NCBI-ProteinID:
XP_073942041
LinkDB
All DBs
Position
3:complement(16545807..16550559)
Genome browser
AA seq
849 aa
AA seq
DB search
MPLLDGKEIEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCITDPCYDHVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITVTRKAFDSALRALPITQHHRIWPLYLSFLKKHRIPETAVRVFRRYLKLSPEDTEEYI
DYLISINKLDEAAVKLAQIVNNENFQSKHGKSNHQVWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEDVAKKPNPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEENDQIEDARLIFEKATQ
VNYAKVDDLASVWCEWTEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGSYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLSKFLKRYGGSKLERARDLFEQCLEHCPAEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTGVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEGK
AREMCIRFAEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQNKG
NIMFVRGETQGLKESADKVVNPDEIDIDDDESGNSNDEEDSAVVAPVETKEIPAAVFGGL
VPSTSKDSD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcctttacttgatggtaaagagatcgagatattttttagcgaagaagatttaccatat
gaagaagaaattttaagaaaccccttttctgtcaaacattggcttagatacatagaacac
aaaaaaggtgcgcctaagcatgaaataaatatgatttatgaaagagcattgaaggagtta
cctggttcttttaaactatggtataattatttgaaactcagaaggtctcagattcgaggt
cgctgcattactgatccttgctatgatcatgtgaacaactgctttgaaagatccttggtg
tttatgcacaaaatgccaagaatttggatggactattgtacctttttgactgatcagtgc
aagataacagttactcgaaaagccttcgactctgctcttcgagctttgcctataactcag
caccatagaatatggcctctttacctgagcttcctgaaaaagcaccgcattcctgaaaca
gctgttagggtgttcagacgctatcttaagttgagtcctgaagacacagaggaatatatt
gactatcttatttcaatcaataaattggatgaagctgctgttaagttagctcaaattgtc
aataatgaaaactttcagtctaaacatggaaaatcaaaccaccaggtgtggaatgagctg
tgtgaactaatctccaaaaatcctgataagatacattctctgaatgttgatgccattatc
agaggagggctgagacgctacacagaccagctgggccacttatggaattctcttgcagat
tattatgttagaagtggtttatttgaaagagctagagatatctatgaagaagctattcag
actgttaccactgtaagagacttcactcaagtttttgatgcatatgctcaatttgaggaa
ttaagtttaagtaaaaaaatggaagatgtagctaagaagccaaacccttctgaagatgat
gatattgatctagaactgaggcttgcaagatttgaataccttatggaaagaaggctatta
cttctgaactcagttcttctgagacaaaatcctcataatgtggcagagtggcataaaaga
gttaagctatatgaaggaaaaccacatgaaattattgacacatacacagaagctgtgcaa
actgtagatcccaaacttgctgttggaaaactatatacactttgggttggttttgcaaaa
ttctatgaagaaaatgatcaaatagaagatgccagattgatttttgaaaaagcaactcag
gttaattatgcaaaagttgatgatttggcgtctgtttggtgtgaatggacagaaatggaa
attagacatgaaaattacgaagaagcactaaaactcatgcaaaaagcaactgttttacca
agccgtaaagttgcttaccatgatgatacagaaacagtacaaatgcgtttgtacaaatca
ttgaaagtttggtctatgtatgctgatctagaagaaagttttggtagttataaatcatgc
aaagctgtgtatgaccatatcatagacttgaaaattgcaacaccacaaataatcataaat
tatggtttgttcttagaggaacataattattttgaggaagcattcagagcttatgaaaaa
ggtattgccctgtttaaatggcctaatgtatatgacatatggaatacatatctgagtaag
tttttgaaaagatatggtggctctaaacttgagagagcaagagatttatttgaacagtgt
ctagaacattgtcctgcagagtttgcaaaatctatatttttgctatatgcaaaattagaa
gaagaacatggtctagcacgacatgccatgtctgtatatgagcgtgccaccacaggagtt
ctaccagagcaaatgtttgaaatgtttaatatttacataaagaaagctgctgaaatctat
ggagttccaaaaactcgccaaatatatgaaaaagctattgaaacattaccagaaggaaaa
gcaagagaaatgtgtataagatttgctgaaatggaaacacgtcttggagaaatagacaga
gctcgtgctatttatgcacactgcagtcaaatgtgtgatcccagaataactgctgacttt
tggaacacatggaaggaatttgaagttcgccatggaaatgaagatacaatgcgtgaaatg
ttgagaattaagaggagtgtccaagctacatacaatacacaggtgaatatgatgtcggct
cagatgttgagttctgcagctcaggcagcaggtactatttctgacttggcacctggaatg
aaggatggcatgagaatgctcgaagctaaagcagctgaaatggcagttcaaaacaaagga
aacatcatgtttgtgcgaggagaaacacaaggccttaaagagagtgcagataaagtggtt
aatcctgatgaaatagatattgatgatgatgaatctggtaatagtaatgatgaagaagat
agtgctgtggtagctccagtggaaacaaaagaaataccagctgctgtatttggtggactt
gtaccaagtacaagcaaagatagtgattaa
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