Choristoneura fumiferana (eastern spruce budworm): 141427539
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Entry
141427539 CDS
T11020
Symbol
Polr1B
Name
(RefSeq) RNA polymerase I subunit Rpl135
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141427539 (Polr1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141427539 (Polr1B)
Enzymes [BR:
cfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141427539 (Polr1B)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
141427539 (Polr1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-GeneID:
141427539
NCBI-ProteinID:
XP_073943178
LinkDB
All DBs
Position
Z:12474613..12506043
Genome browser
AA seq
1130 aa
AA seq
DB search
MNSKKLKQNPSLAYTSHPDYRKPPQIANPHLQCLGAPHIDSFNFMATDGIKAAIADIIPV
EFELPNGQRIKITIDEAAFAKPLVPMDVVGVKNQKVLPTECRQRAATYKGEFKVRITLKI
DGKEITTDRSLGQLPVMVKSKNCHLADLSPEELIKHNEHADEWGGYFIIKGHERLARMLL
VTRRNYPVAIKRSGWKMRGNLFSDYGVMVRCVKFDQTATNNVLHFLQNGTCKLMFSYQKV
MYYAPLILIIKCLVDWTDLAIYKALIHGKKQDLYYVNCIQNMLRELHEEGLHTREECRLY
LGRMFRERLTALPPWRSDDEAADFLLRRCLLIHLKEPMDKFNALVYMTHKLYDVVQNKCK
VEGADAVMVQELQLGGHLYLQVLKERLEALLISVKYNIIKKAQQSKQLNMNLRELQMLLR
AAGTLEQRMETFLATGNAPSNHVSLPQYKGLTIVAENINRMRYMSHFKAIHRGSFFMEMR
TTEARQLLPDAWGFVCPVHTPDGAPCGLLNHLTMSAQVTQNPDLKQVEQLPYVLVRCGMA
PISAVTRMPITVDEYLYPVFIDGRLVGYFDEDTVQKSTAYLRSLKIKGEEVPISTEIVVI
PKQQICGQYPGVFLFTTEARMMRPVINLSTGQLELIGTMEQLYLDIAVTQQEIYKGKTTH
LELSKSAFMSNLAQLVPMPDCNQSPRNMYQCQMGKQTMGTPIHTWMTNAETKLYRLQTPG
TPLFRPTHYDNIGLDDYPCGTNAIVAVISYTGYDMEDAMIINKSAYERGFGAGTVYKSDF
IELKHATSYFCRDNSKPDLARYIDDDGLPAVGARVQPEDPFYCYFDGEKSQYVVSRFHGK
EEVFVDSVRLCGDFNSKAPRKACIMLRIQRNPTVGDKFASRAGQKGICSQKWAAEDLPFT
ESGLIPDILFNPHGFPSRMTIAMMIENMAGKAASTHGHVHDATPFRFNEKDTAINYFGRL
LELAGYNYYGTERMYSGVDGREMQADIFFGVIHYQRLRHMVSDKWQVRTTGAVDAMTRQP
VKGRRRGGGVRLGEMERDALISHGAAFLLQDRLLDCSDKSRGIMCAKCGTLLGPIVGDAA
GSKETCRLCGEGDLVSVAIPYIFKFFVTQLASVNINVKINCDQNLAIKSS
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaattccaagaaattaaagcaaaatccgtctttggcgtatacaagccaccccgattat
cgaaaaccaccacaaatcgctaacccgcacttacaatgtctcggcgccccacacatagac
tcattcaatttcatggcaacagacggcattaaggcagccattgccgatataatccctgtt
gaatttgagttgccgaatgggcagcgcatcaaaattaccatagatgaagctgcctttgct
aaacctctggtacctatggacgtagttggtgtcaagaaccaaaaagttctcccaacagaa
tgtagacaaagggcagccacctacaaaggagaattcaaggttcggataacattgaaaatt
gatggaaaggaaattaccacagacagatctctgggacagttacctgtgatggttaagtct
aagaactgccacctggctgacctctctccagaagaacttatcaagcacaatgaacatgca
gatgaatggggaggctattttattatcaaggggcacgagcgactcgcacgcatgcttctt
gttacaaggagaaattaccctgtggccataaagcgctcaggttggaaaatgaggggaaac
cttttctcggactatggtgtgatggttcgttgcgtcaaattcgatcaaactgcaaccaac
aatgtcctccatttcctacaaaatggtacctgcaagttgatgttctcttaccaaaaagtg
atgtactatgcaccattgatcctgatcataaaatgtttagtggactggactgatctcgcc
atctacaaggcactgattcacgggaagaaacaagacttgtattatgttaattgcattcaa
aacatgcttcgcgaacttcacgaggaggggttgcatacgcgggaggaatgccgcttgtac
ctcggacgcatgttcagggagcggctgacggccctgccgccctggaggagcgatgacgag
gccgcggacttcctccttcggcgctgtctcctcatacacctgaaggagcccatggacaag
ttcaacgcgctcgtctacatgacgcataagctgtatgacgttgtccagaataagtgcaag
gtggaaggtgccgacgcggtgatggtacaagagttacagttgggcggccatctatacctt
caagtgttgaaggagcggctcgaagcgctgctcatttccgttaagtacaacattatcaag
aaagcgcaacagagcaaacagctcaatatgaacttgagagaattacaaatgctgctccga
gcggccggcactcttgagcagaggatggagacgttcctggcgacaggcaacgcgccgtcc
aaccacgtgtcgctgccgcagtacaaaggcctcaccatcgtcgcagaaaacatcaacagg
atgagatacatgtcgcatttcaaagcgatccatcgaggctcgttctttatggagatgcgg
acgacggaggcgcggcagctgctgccggacgcgtggggcttcgtctgccctgtgcacacg
ccggacggcgcgccctgcggcctgctcaaccacctcaccatgtccgctcaggtgacgcaa
aatcctgaccttaagcaggtggaacaactgccctatgtactagtaagatgtggaatggcg
cctataagcgcggtgactcgcatgccgatcaccgttgacgaatacctatacccggtcttc
atagacgggcgcctggtcggctactttgacgaagacacggtgcagaagtccactgcttac
ctcagatcattgaagattaaaggcgaagaagtgcccattagcactgaaatcgtcgtcata
cctaaacaacagatctgtggccaatacccgggcgtgtttctgttcacgacggaagcgcgc
atgatgcggccggtcatcaatctctcgactggccagttggaactcatcgggaccatggaa
cagttgtatttggacatcgctgtcactcagcaagagatatacaaaggcaagactacgcat
ttggaactatcgaaatcggcgttcatgagcaacctagctcagttggtgccgatgccagat
tgcaatcaatcaccccgtaacatgtatcagtgtcagatgggcaagcagaccatgggcacg
ccgattcacacgtggatgacgaacgccgagacgaaactgtaccggctgcagactcccggc
actccgctgttcaggcccacacactacgacaacatcggcctggacgactatccgtgcggc
actaatgccatagttgctgttatatcttacacgggttacgacatggaagacgcgatgata
atcaacaagtcggcgtacgagcggggcttcggcgccggcacagtatacaagtctgatttc
atcgaactgaagcacgccacgtcttacttctgccgggacaacagcaagccggatctggca
cggtacatcgacgacgacggcctgccggctgtcggcgcaagagtgcagcccgaagaccct
ttctactgttactttgacggtgagaagagtcagtatgttgtctctcgcttccacggcaaa
gaagaggtgtttgttgacagcgtgagactctgcggtgatttcaattcaaaggcaccgagg
aaagcctgtatcatgctcagaatacagcgtaacccgacagtgggtgacaagttcgcttcc
cgcgccggccagaagggcatctgttcccagaagtgggcggctgaggatctgcccttcaca
gagtccggtctgatcccggacatactcttcaacccgcacggcttcccctcgcgtatgaca
atcgccatgatgatcgagaatatggcggggaaagccgccagcacacacggacatgtgcac
gacgcgacgcccttccgcttcaacgagaaagacacggcaatcaactacttcggccgcctg
ctggagttggctggctacaactattacggcaccgagcgaatgtacagcggcgtggacggc
cgcgagatgcaagcggacatattcttcggcgtgatccactaccagcggctgcggcatatg
gtgtctgacaagtggcaggtccgtacgacgggcgcggtggacgcaatgacgcggcagcca
gtgaaggggcgccggcgcggaggcggcgtcaggctcggggagatggaacgcgacgcgctc
atctcgcacggcgctgctttcctactgcaagatcgcctactcgactgctccgacaaaagc
cggggaataatgtgcgcgaaatgcggtacactcctcgggcctatagtcggggatgcggcc
ggcagcaaagaaacctgtcggctgtgcggggaaggcgaccttgtctccgttgcaataccg
tacattttcaaattcttcgttacgcaactcgcttcagtcaacatcaacgtcaaaatcaac
tgtgaccagaacctagctattaagagttcctaa
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