Choristoneura fumiferana (eastern spruce budworm): 141427698
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Entry
141427698 CDS
T11020
Symbol
skd
Name
(RefSeq) LOW QUALITY PROTEIN: mediator complex subunit skuld
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141427698 (skd)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
141427698 (skd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Motif
Other DBs
NCBI-GeneID:
141427698
NCBI-ProteinID:
XP_073943394
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All DBs
Position
5:complement(2319711..2392373)
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AA seq
1737 aa
AA seq
DB search
MLSVQTELYGIKWRKLVWGETAGGGGGGGEGEEGAAPLADPVISSYARCLAGDILCVWRR
VPAPQPQDIYEMSVPAPPPPPLSLRAAKELWIFWYGEEPDLNGLVAPELITGQGDQGSWE
SGLSYECRSLLFKALHNLIERCLLSRDFVRLGKWFVQPYDGDEEDVGKSPWHLSFSFAFF
LHGESTVCASVDVRQHPPVRTLTAKRLARLSAREPQPDPDNKVILAPFGLEGTVTGRDWS
DSDAATARLLDAWRQLYPLEQGCGAVEVLMGGVRMRYPLPYVLVTGMEPPPAPPPPAAEL
AARAAMALTTPRPSQPADISYGETAEKFEDFVDPTRKTPCTCAKGGCLSAACAAASPGSC
GGGSPAAAVSAPSSAGAPPPSPHTSHLAHTAAHSHQSACVPTTLHTPAPTPETHAPPTPA
PPSAPPPTKLYNQNDSPRDASHATTASPVPAELLKRPVLPRGETRVDPLEDEHSLHMLYD
YTTVHAWLEHPVKRFKTETSWFREELALGTAGGDLYAGHDHTQMPAMPDHARDIKQERPD
HDTTPYPNLFTSDGLCPTLKDLEQIFDNSDDASGDESVRLLQVQTPPDSNKSTCEEGRGR
MVRAEELSKMFPTPPSLEAHAQPSPGFTMDALDKPHHLTPHATPPHEPIEDWSYVFKPPT
VYKCHGSSKYAPLTTLPSHALPPVALPPHAVYRPRWQHDKRDGEQTNTQQTGTKRSAAAS
PPPLEAPAAAPSSVPAAASPPCAASPAPSPPPRAARRACPLLLNVLLADTVLNVFRDHNF
DSCTLCVCNAGPKVVGNIRGADSATYLPGQGGGSPDASPAPDEDPGRCTCGFSAVVNRRL
AHNAGLFYEDEMEITGIASGPGQTRGQGQGGRLGLQGVAGAVLGMCCSRGGAASALARAA
RRAAAAPRPQNTTPGVVVQVLDGVAAAARALRAAAGAGAGGRGSAAAGGAVHRWPFIGAR
APRCSRDVVRLMRRLRPLLQDAIQKRCCGARMWDGVTGPLTWRQFHRLAGRGNEDLCEPQ
PVPPLLVGHDRDWIALSPYALRHWERLALEPYSYSRDVAYIVLAADGEVLTDPIKTFFRE
LSTAYEALKLGRHQPITRIAREGLIRTSPSERDQSAEEWTGELPPGRLGDYMKAYAETLR
TNLVPQLASLKIDSSLLDTESKTTPMDRPSPSPMRPPPPDHPGGDADDAPPANPTVSACW
EEEEGGAPALVIYVVEPPAAHASRAHALHSMLQLAARTHHHLKHHNPLVKIISLEGVCET
AGIGGGARSELRALAFSVFTGARRLLAHAPAGKSLTGFGTAAQAHLLLDAMDEKNRAPYK
LFSPAWVLAPPRALKEVAETWGQAGEQGSVLFLCYCLSHDQRWLLAAATDARGELLDTAA
INIHVPHRSRRRRMAPARRCGLTKLMDWALGVMSQAAQPWRLVVGRLGRIGHGELKGWSW
LLSRKNLVRASSMLREICGSCSVLYPAGAPCILSACLVSTEPDPCLRLMADRFTPDERFS
QASIQSHLHTPRDVTATHILVFPTSATTQSNQMPFEQPMANGEADDMMFLGVDMNDEDMG
EDNMTDLLMTDMFNNMWPQGSPRASPRRHDDDEPARPQPVHSAAPIDNTQEQVGTVLQQP
LALGYLVSTAPLGAMPAWWWAGCAHLRDACPAFLKTALLLHAGHVQAADDYTSLTQRHHH
THPLDSTTTTDVLRYVLEGYNALSWLALDGETHDRRSCLPLHVQVLMQLYHTAAALG
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgcttagtgtgcaaacggagctgtatggcataaaatggcgtaagctagtttggggagag
acggcgggcggcggcggcggcggcggcgagggcgaggagggcgccgcgccgctggccgac
ccggtgatcagcagctacgcgcgctgcctcgccggtgacatcctgtgcgtgtggcggcgc
gtgccggcgccccagccccaggacatctacgagatgagtgtgcccgcgccgccgccgccc
ccgctctccctcagagccgccaaggaactctggatcttctggtacggcgaagaaccagat
ctaaacggattggttgcgcccgagctgataactggacagggcgaccaaggctcctgggag
agtggactgtcctacgagtgccgttccttgctcttcaaggccctccacaacctaatcgaa
agatgtctgctctcgcgggacttcgtgaggctcggcaagtggttcgtgcagccgtacgac
ggagacgaggaagatgtagggaaaagcccgtggcacctgtctttttcgttcgcgttcttc
ctccacggcgagagcacggtctgcgcgtcagtggatgtgcgccagcacccgccggtccgc
actctgaccgcgaaacggctcgcccggctcagcgcgagggagccacagcccgaccctgac
aacaaggtgatactggcgccgttcggtctggagggcacggtgacgggacgcgactggagc
gacagcgacgcggccaccgcgcggcttctggacgcgtggcggcagctctaccccctcgag
cagggctgcggtgccgtcgaggtgctgatgggcggcgtgcgcatgcgctacccgctgccg
tacgtgctggtgacgggcatggagccgccgcccgcgccgccgccccccgccgccgagctc
gccgcgcgcgccgccatggcgctcaccacgccacgccccagccagccagcggacatttcc
tacggcgagacggctgagaaattcgaggatttcgttgaccccaccagaaaaacaccttgt
acctgcgccaaaggcgggtgcctgagcgcggcgtgcgcggcggcgtcgccgggctcttgc
ggcggcggctcgcccgcggcggccgtgtccgcgccctcctcggccggcgcgccgcccccc
tcgccgcacacctcgcatctcgctcacactgctgcacactcgcatcaatctgcgtgcgta
ccgacgacgttgcacacgccggcgccgacgccggagacgcacgcgccgcccacgcccgcc
ccgccctccgccccgcctcccaccaaactatacaatcagaacgattccccgcgcgacgcg
tcgcacgcgacgacggcgtcgccggtccccgccgagctgctgaaaagaccagtgttgccg
cgcggcgagactcgcgtcgacccgttggaagacgagcattcgctgcatatgctatatgac
tacaccaccgtgcatgcttggctggagcacccagtgaagcggttcaagacggagacgagc
tggttccgcgaggagctggcgctgggcaccgcgggcggggacctgtacgcgggccacgac
cacacgcagatgcccgccatgcccgaccacgcccgggacatcaagcaggagcgccccgac
cacgacaccacgccgtacccgaaccttttcacgtccgacggtctctgtcccaccctcaaa
gacctcgagcagatcttcgacaattccgacgacgccagcggggatgagtcggtaagactt
ctgcaagtacaaacgccgccggactctaacaagtcgacgtgtgaagagggccgcgggcgc
atggtgcgcgccgaggagctcagcaagatgttcccgacgccgccgtcgctggaggcgcac
gcgcagccctcgcccggcttcaccatggacgcgctcgacaagccgcaccacctcacgccg
cacgccacgccgccgcacgagcccattgaggactggtcgtacgtgttcaaaccgcccacc
gtgtacaagtgccacggctcgtccaagtacgcgccgctgacgacgctgccgtcgcacgcg
ctgccgccggtcgcgctgccgccgcacgccgtctaccgcccgcgctggcagcacgacaag
cgggacggcgaacaaactaacacgcaacaaactggcacgaagcggtccgcggccgcgtcg
ccgccgccactggaggcgccggcggcggcgccgagctctgtccccgcggcggcgtccccc
ccttgcgcggcctcccccgcgccgtcgccgccgccccgcgccgcgcgccgcgcctgcccg
ctgctcttgaacgtgctgctggcagacacggtgctgaacgtcttccgggaccacaacttt
gacagctgcacgctgtgcgtctgcaacgccgggcccaaggtggtgggcaacatccgcggc
gcggactcggcgacgtacctgccggggcagggcggcgggtcgccggacgcgtcgccggcg
ccggacgaggaccccggccgctgcacgtgcgggttcagcgccgtcgtcaaccgacggctc
gcgcacaacgcgggactcttctacgaggacgagatggaaatcacgggtatcgcgtctggt
ccgggtcagacgcgggggcaggggcagggcgggcggctggggctgcagggcgtggcgggc
gcggtgctgggcatgtgctgcagccgggggggcgccgcctccgcgctggcgcgcgccgcc
cgccgcgccgccgccgcgccgcgcccgcagaacaccacaccaggtgtcgttgtgcaggta
cttgacggcgtggcggcggcggcgcgggcgctgcgcgcggcggcgggcgccggcgcgggc
gggcgcgggagcgcggcggcgggcggcgccgtgcaccgctggccgttcatcggcgcgcgt
gcgccgcgctgctccagggacgtcgtcagattaatgcggcgactccggcccctcctccaa
gacgcgatccagaagcgttgctgcggcgcgcgcatgtgggacggcgtgacgggcccgctg
acgtggcggcagttccaccggctggccggccgcgggaacgaggacctctgcgagccgcag
cccgtgccgcccctcctcgtcggacacgaccgcgactggatagcgctctccccctacgcc
ctccgccactgggagaggctcgcgctagaaccctattcctactcccgagacgtagcgtac
atcgtcctggcggccgacggcgaagtcctcaccgaccccatcaaaacgttcttccgagaa
ttatcaacggcgtacgaggctctcaaactcggccggcaccaacccataacccggatagcc
cgcgagggcttgatacggacctcacccagcgaacgcgaccaaagcgccgaggagtggacg
ggcgagctgccgcccggacgcctcggcgactacatgaaagcttacgcggaaacactgcgc
accaatctagtacctcagctcgccagcctcaagatagacagctcgctgctggacactgag
tccaagacgacgccgatggaccggccgtcgccgtcgccgatgcggccgcccccccccgac
cacccggggggcgacgcggacgacgcgccgcccgccaaccccacggtgtccgcctgctgg
gaggaagaggagggcggcgccccggccctcgtcatctacgtcgtggagccccccgccgcg
cacgcctcccgcgcgcacgcgttgcactcgatgctgcaactcgctgcgcggacgcatcac
cacctcaaacatcacaacccactcgtcaagataatctctttggagggcgtgtgcgagacg
gcgggcatcggcggcggcgcgcggtcggagctgcgcgcgctggcgttcagcgtgttcacg
ggcgcgcggcggctgctcgcgcacgcgcccgccggcaagtcgctcaccggcttcggcacc
gccgcgcaggcgcatctgctgctcgacgctatggacgagaaaaaccgtgccccgtacaaa
ttgttttcgccggcgtgggtgctggcgccgccgcgcgcgctgaaggaggtggcggagacg
tgggggcaggccggcgagcagggctccgtgctgttcctgtgctactgcctgtcgcacgac
cagcgctggctgctcgccgccgccacggacgcgcgcggcgagctgctcgacaccgccgcc
atcaacatacacgtgccgcacagatcccggcggagacggatggcgccggcgcggcgctgc
gggctgacgaaactgatggactgggcgctgggcgtgatgagccaggccgcgcagccctgg
cggctcgtcgtcggccggctcggccgcatcgggcacggcgagctcaagggttggagctgg
ctcctgtcccgcaagaacctggtccgcgcgtccagcatgctccgcgagatctgcggcagc
tgctcggtgctgtacccggcgggcgcgccgtgcatcctgtcggcgtgcctcgtgtccacg
gagcccgacccctgcctgcggctcatggccgaccgcttcacgcccgacgagcgcttctcg
caggcctccatacagagccatctgcacacgccccgggacgtcaccgccacgcatatactc
gtgttccctacgtctgccaccacgcagtctaaccagatgccgttcgagcagccgatggcg
aacggcgaggcggacgacatgatgttcctcggcgtggacatgaacgacgaggacatgggc
gaggacaacatgacggacctgctgatgacggacatgttcaacaacatgtggccgcagggc
tccccgcgcgcctcgccgcgccgccacgacgacgacgagcccgcgcgcccgcagcccgtg
cacagcgcagcgcccatagacaacacgcaggagcaagtgggcacggtgctgcagcagcct
ttggcgctgggctacctggtgtcgacggcgccgctgggcgcgatgccggcctggtggtgg
gcgggctgcgcgcacctgcgcgacgcgtgccccgccttcctcaagaccgcgctgctgctg
cacgccggccacgtgcaggccgccgacgactacaccagcctcacgcagcgacaccaccac
acgcacccgctagactccaccaccaccaccgacgtgctcagatacgtgctagaaggctac
aacgcgctgtcgtggctcgctctagacggagagacccacgaccgacgctcctgcctgccg
ctccacgtgcaagtgctgatgcagctgtaccacaccgccgccgcgctcgggtag
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