Choristoneura fumiferana (eastern spruce budworm): 141427889
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Entry
141427889 CDS
T11020
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6
KO
K13175
THO complex subunit 6
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03013
Nucleocytoplasmic transport
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141427889 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
141427889 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141427889 (thoc6)
03041 Spliceosome [BR:
cfum03041
]
141427889 (thoc6)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
141427889 (thoc6)
Spliceosome [BR:
cfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141427889 (thoc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_ACSF4
NBCH_WD40
EIF3I
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_NOL10_N
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
141427889
NCBI-ProteinID:
XP_073943584
LinkDB
All DBs
Position
5:562435..566161
Genome browser
AA seq
324 aa
AA seq
DB search
MLDKILYNTILCQTFSPCGKYLVAGNIYGQLAVFDLDRILNPVIELLTSDYNKPKQIHKI
ESGKQICSLITTDSFLIIGTINEITGWDWKAVTSGKWSKPAWTITIPVKSSMEQSDVNSL
WLSEDEIKLFAGCGDNNIYAFNLEDGRLVTTYEGHSDYIHSIHGKSQQLISAGEDGLVLL
WDERTGKSHSRLEPHANSKVSRPDIGKWVGAATLGDDWIVCGGGPRLSLWHLRSLDPVTA
FDIADHGVHVAFFHDDCIVAGGASKHLYQLSYSGEVRVELPVSATTVYSAAMKTNPKVLA
IAGSSSEIDLCTTFNYRDQVLHFR
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacaaaatcctatacaatactatattgtgccaaacgttttcaccctgtggtaaa
tatttagtggccggcaatatttacggacaactagctgtatttgacctagaccgaatcttg
aatcccgttatagagctgctcacatcagattataacaagccaaagcaaatccataaaatc
gaatccggcaaacagatatgcagtttgattaccacagacagctttctcatcattggtaca
atcaatgaaatcaccggttgggactggaaggctgttacttctggaaaatggtcaaaaccc
gcgtggacaattacaatacctgtaaaatcgtctatggaacagtctgatgttaatagtctg
tggttgtctgaagatgaaattaagctgtttgcggggtgtggagacaataatatttatgca
ttcaacttggaagatgggaggttggttaccacctacgaaggacatagtgattatatacac
agtattcatggcaagtctcaacagctgatatcagctggtgaagatggacttgtcctgctg
tgggatgagaggacgggcaagtcccacagccggctggagccccatgctaacagtaaagtc
agtcggcctgatattggcaagtgggtgggagctgccacattgggagacgattggattgtg
tgcgggggcggtccccgcctatccctgtggcaccttcgctccctggaccccgtcacagca
ttcgacatcgccgaccacggagtccacgtagcgttcttccacgacgactgcatagtggcc
ggcggggcatccaagcatctctatcagctcagctactccggcgaagtcagagtggaactg
ccggtgtcggctactacggtgtactcagcagctatgaagacgaaccccaaggtgttggcc
atagctggctcaagctccgagatcgatctgtgtactacgtttaattatagagatcaggtg
ctgcattttcggtaa
DBGET
integrated database retrieval system
