Choristoneura fumiferana (eastern spruce budworm): 141427991
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Entry
141427991 CDS
T11020
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141427991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141427991
Enzymes [BR:
cfum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141427991
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141427991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
141427991
NCBI-ProteinID:
XP_073943735
LinkDB
All DBs
Position
5:complement(6102482..6118187)
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AA seq
528 aa
AA seq
DB search
MEITRQNFAEQFENITKNLKKSCFIGFDAEFTAILSGECFKHRLFDTNEERYNRIKTEVS
KMIMTQVGLTMFQYDRDHDTYVATGYTFHLCPQIFGDVDQSFIFQASTLKFLCRHNFNFN
KFTYEGLPYLSKEEEVRVRQHLKDNQMFKNLTRMLDMDEEKLLQHYCSEVSKWLASKEED
TMYIDIDSPVLRYVVHNEIRLRFPEVLTTDSLGNSNKVLLYKDKYVDGANSAPMAILEEN
LMSHLLGFSQIISLLESYKKPIMGHNIFLDTVLLHNQFIGPLPKKYSTFKRNINNMFPNI
YDTKYISHVMAKKLSFDEVWKSNALQDLYEFFSEAKCRKLQNGVNLIKLSTPFDVKQSYH
EAGWDSFCTGYCFIRLGHWAACENSGNYRPVGPTEVLSALAPFRSKVNIIRGAILYMDLA
DEDPPRQRPELLHVRSLQERVLNVEKIASLLAGLGSIDVKPYDSRSALVAVGTQHTVDKI
LKQYRDSREYKISMYNVYRHSMQARMAVWGSAIITGSLLLYVLHKSVK
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggaaataacaaggcaaaactttgcagagcaattcgaaaacataaccaagaacttgaaa
aaatcttgtttcataggttttgatgcggaatttacggcaatattatcgggagaatgcttt
aaacatcgattgtttgatacaaatgaagaaaggtacaacaggatcaagactgaagtgagt
aaaatgatcatgacacaagtgggattgacaatgttccagtatgaccgggaccatgataca
tatgtggccacagggtacacattccacttgtgtccacaaatcttcggagatgttgaccag
tcattcatattccaggcgtccacgcttaagttcctctgtcgccacaactttaattttaac
aagttcacatatgaaggtcttccataccttagcaaagaggaagaagtcagggtgcgacaa
cacttaaaagataaccagatgttcaagaacctgacccgaatgctggacatggatgaagag
aaactactacagcattactgctctgaggtctctaaatggcttgccagcaaagaagaggac
acaatgtacatagacatagacagtcccgtgctgcgatacgtcgtccacaacgaaatcagg
ttacgatttcccgaggttctgaccacagatagcctaggtaatagtaacaaggttttattg
tacaaagataaatatgtggacggtgcaaacagcgcaccaatggctattctcgaagaaaat
ctaatgagccacctactaggtttctcacaaatcatatccctcctagaatcgtacaaaaag
cctataatgggacacaatattttcctagacacggtgcttctacataatcagtttatagga
ccgttgcctaagaaatattcgacattcaaaaggaatatcaacaacatgtttccaaatatt
tatgacacgaagtatatttcacatgttatggcgaaaaagttgtcgttcgatgaagtttgg
aaatcaaacgcgttgcaagacctgtacgaattcttttcggaggcgaaatgtaggaaatta
caaaatggcgtcaacctaataaagctgagtacgccgtttgacgttaagcagtcttaccac
gaagcgggatgggactccttctgcaccgggtactgcttcataaggcttggccattgggcg
gcgtgcgagaacagcggcaactaccgcccggtcggcccgacggaagtgctctctgcgctg
gcgcccttccgcagcaaagttaacatcattcggggcgctattttgtacatggatcttgcc
gacgaggaccctccacgccaacggccggagttactgcacgtcaggtcactgcaggaacgc
gtgcttaacgttgaaaagatcgcttcactgctggcggggctcggttccatcgatgtcaag
ccgtacgacagccggtcggctctcgtggctgttggcacgcaacacacggttgacaagatc
ctgaagcagtatcgagacagcagagagtataagatatcaatgtacaacgtatatagacat
tccatgcaggctcggatggcagtgtggggcagtgcgattattactggcagtctgctgctg
tatgtcctgcataaaagcgtcaagtga
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