Choristoneura fumiferana (eastern spruce budworm): 141428118
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Entry
141428118 CDS
T11020
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3b subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141428118 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141428118 (Sf3b1)
03036 Chromosome and associated proteins [BR:
cfum03036
]
141428118 (Sf3b1)
Spliceosome [BR:
cfum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141428118 (Sf3b1)
Complex B
141428118 (Sf3b1)
Complex C
U2 SnRNP specific factors
141428118 (Sf3b1)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
141428118 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
UTP20_N
Motif
Other DBs
NCBI-GeneID:
141428118
NCBI-ProteinID:
XP_073943982
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All DBs
Position
5:11577057..11588940
Genome browser
AA seq
1338 aa
AA seq
DB search
MEKIPRTHEAIEAQIKEIQSKKKEIQAENGNNKGVSLGETYYDSDIYDSSGQGGKSRYDG
YVTSIAANDEVEDEDVENVPTSQKRPGYTAPASLLNDIAQSDKDYDPFADKRRPTIADRE
DEYRQKRRRMIISPERMDPFAEGGKTPDVGSRTYTEIMKEQYLRAEETELRKKLLERARE
GTLKPVVQANGDATKPGTKRKGRWDQSSEDTPSVKKSSTTPSSQATPSWDNERGAWEETP
GAAGRGGETPGATPSARVWDATPGHITPGHATPGRDTPAQHASRRNRWDETPKTDRETPG
HNSGWAETPRTDRGAGVDTIQETPTPGTKRRSRWDETPGATPAPATPTPSHATPSHATPS
HATPSHGTPGTPHTPVFTPGGSTPVGMKAMAMATPTPGHVASMTPEQLQAYRWEKEIDER
NRPYTDEELDAMFPPGYKVLPPPAGYVPIRTPARKLTATPTPLAGTPIGFFMQTEEAGGS
AAAAARLLDPQPKGSQQLPFMKPEDAQYFDKLLIDVDEETLSPDELKERKIMKLLLKIKN
GTPPMCKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIVQQIAILMGCAILPHLKSL
VEIIEHGLVDEQQKVRTITALASAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEPQYI
MDEILPHFFKHFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRIVDDLKDDNEQYRK
MVMESIEKILANLGAADIDSKLEEALIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVK
PYLPQICGIILWRMNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
PEFVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYI
YAVCPLLEDALMDRDLVHRQTACAAIKHMALGVYGFGCEDALVHLLNHVWPNIFETSPHL
VQAFMDAVEGMRVALGPIKILQYALQGLFHPARKVRDVYWKIYNTLYIGGQDALVAGYPR
IQNDPNNHFIRYELDYLL
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaataccaaggacccacgaagctattgaagctcaaatcaaagaaattcaatcc
aagaagaaagaaatacaagcagaaaatgggaataataaaggtgtttcactaggtgaaaca
tactatgacagtgatatatatgatagctctggccagggtggaaaatcccgatatgatgga
tatgtaacttccatcgcagccaatgatgaagttgaagatgaggatgtggaaaatgttcca
acttcacagaaaagaccaggatatactgctccggcttcactgttaaatgacattgctcaa
agcgacaaggactatgatccatttgcagataaacgcagaccaactatcgcagacagagaa
gatgaatacaggcaaaagaggcgtaggatgattatatctcctgagcgtatggatcctttt
gctgaaggtggtaaaaccccagacgttggatccaggacatatacagaaattatgaaagag
cagtacctgagggcagaagaaactgagttaaggaaaaagcttctagagagagctcgagaa
ggcactttgaagcctgtagtacaagcaaatggagatgctactaaaccaggcacaaaacgc
aaaggacgttgggatcagagctcagaagacacaccctctgtgaaaaaatcttcaactaca
ccaagctctcaagctacaccatcttgggataatgagagaggtgcatgggaagaaacacct
ggtgcagcggggcgcggcggcgagacgccgggcgctacgccgtcggcgcgcgtgtgggac
gcaacgccgggacatatcacgccagggcatgccacgcccggacgtgacacgcctgcccag
cacgcctccaggcgtaaccgctgggacgagacccctaagactgatagagaaactcctggg
cacaacagcgggtgggcagaaacacctcgcacggaccgcggcgctggagtagataccatc
caggagacgccaacgccgggtaccaagcgccgctcgcgctgggacgagaccccgggcgcc
acgcccgcaccggccacaccgacgccgtcgcacgccacgccgtcccacgccactccttca
cacgccacaccgtcacacggtacaccgggcacgccacacacacccgtctttacacctgga
ggatcaacgcctgtgggaatgaaagccatggccatggctacgcctacgccgggtcacgtc
gcctccatgacacccgagcagctgcaagcctatcgatgggaaaaagagatagacgagcgc
aacagaccttacaccgatgaagagttggatgccatgttcccaccagggtacaaggttttg
cccccgccagccggttatgttccgatccggaccccggctcgtaagctgaccgcaacgcct
accccgttggctggtaccccaatcggctttttcatgcagacggaggaggcgggtggctcg
gccgcggccgccgcgcgcttgctggacccgcagcctaaagggagccagcaactgcccttc
atgaagcccgaggacgctcagtactttgacaaactgctcatagacgtcgacgaggaaacg
ctgtcgcccgacgagcttaaagaaagaaagattatgaagctcttgcttaaaattaagaac
ggtacaccgccgatgtgcaaagccgcgctgcgtcagatcacggacaaggcgcgcgagttc
ggcgcagggccgctcttcaaccagatcctgccgctgctcatgagccctactcttgaggat
caagagcgccatctacttgttaaggtcattgaccggattctatacaagctcgatgatctt
gtgcgcccgtacgtccataaaatactggtcgtaattgaaccgcttttgattgacgaagat
tactacgcgcgagtggaaggtcgtgagatcatctcaaaccttgcgaaggctgcaggattg
gccaccatgatttccactatgagacctgatatcgacaatattgatgaatatgtgcgaaat
actactgctagggcttttgccgtcgtcgcatcggcattgggtataccgtcccttctgccc
ttcttgaaagctgtgtgtagatcaaagaaatcatggcaggctcggcacacgggcataaag
atcgtgcagcagatagctattctgatgggatgtgccatattgccccatcttaaatccctt
gtagaaatcattgagcatggtctggtagatgagcagcaaaaagtccgtacaatcactgcg
ttggcgagtgctgctttagcagaagctgctactccttacggcattgaatcatttgattcc
gtactcaagccgttgtggaagggtatcaggacccaccgcggtaaaggtctagccgctttc
ctcaaggctatcggttaccttatccccttgatggacgctgaatacgctaattattatacc
cgtgaggtgatgctcatcctgattcgtgagttccagtcgcctgatgaggaaatgaaaaag
attgtactcaaggtagtgaaacaatgttgcggtacagatggtgtagagcctcagtatatt
atggacgaaattttgccgcacttctttaaacacttctggaaccatcgtatggccctcgac
agacgtaattacagacaacttgttgacactactgtggaaatcgccaacaaagttggagct
tcagaaattataaacagaatagtcgatgatcttaaagacgacaatgaacaatacagaaag
atggttatggaatcaattgaaaagattcttgctaatctaggggcagcggatatcgactcc
aagctggaggaagcactcattgacggcatattgtacgctttccaagaacagaccacagag
gatgttgtgatgttgaacggattcggtacaatcgtgaaccagttgggaaaacgcgttaaa
ccatatttaccccagatttgcggtataatcctgtggcgtatgaacaacaaatcagccaag
gtgcgccaacaggccgccgatcttatctcgcgcattgccgtcgtcatgaagacttgtcaa
gaggaaaaactgatgggacatcttggtgtggtcctatacgaatacttgggagaggagtat
cccgaggtacttggatccattttgggggctctcaaggcgattgtaaacgtcattggtatg
accaaaatgacgccgcccatcaaagatttactgcctcgactaacaccaattttgaaaaac
agacatgaaaaagtacaagagaactgtattgatttagtcggccgtatcgcagatagagga
cctgagtttgtatcagccagggaatggatgagaatatgtttcgagttgctagagttacta
aaggcacacaagaaagccattaggagagctactgtgaacacgttcggttatatcgccaaa
gctattggtccacatgatgtgttggcaactctactgaataatttgaaagtacaagagcga
cagaacagagtatgtacaacagttgctattgccatcgtcgccgagacttgttcgcccttc
acagtactgcctgctttaatgaacgagtacagagttcctgagttgaatgtccaaaatggc
gtattaaagtcattatcgtttttgtttgaatatatcggtgaaatgggcaaggactatatt
tacgccgtgtgcccgttgcttgaagatgcgcttatggacagggatctagtgcacagacaa
actgcgtgtgcggccataaagcacatggcgcttggagtgtacggcttcggctgcgaagac
gcgctcgttcacttgttgaaccacgtctggccaaacatcttcgagacgtcgccccatctc
gtgcaggcgttcatggacgccgttgaaggcatgcgggtcgcgctcggacctatcaaaata
ttgcagtacgctttacagggcttgttccaccctgcaagaaaagttcgcgatgtttactgg
aagatctacaacaccctgtatatcggaggtcaagacgcgctggttgccggatatccgaga
atacaaaacgatcctaacaatcactttattagatacgagttagattatttgctgtaa
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