Choristoneura fumiferana (eastern spruce budworm): 141428121
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Entry
141428121 CDS
T11020
Symbol
Nipped-B
Name
(RefSeq) nipped-B cohesin loading factor
KO
K06672
cohesin loading factor subunit SCC2
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cfum03036
]
141428121 (Nipped-B)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
141428121 (Nipped-B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
Vps52_CC
Motif
Other DBs
NCBI-GeneID:
141428121
NCBI-ProteinID:
XP_073943985
LinkDB
All DBs
Position
5:complement(11632761..11654501)
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AA seq
1982 aa
AA seq
DB search
MNERDIPSVPITTLAGVASLTDLLPVLPLPTPLPSTLNNKSQLFHPRVAEEAAILLATRD
DNLVTLLLQSLMQTSVEHIDLKDESIPNAVSPAPQQQATPELLKAILHVNPNVFDQQQRN
HWSNHVTSKFNGMSPSASYNYASHNTAHSSPSSLGTAVHSTGIPNQQLLAPPCQSSPHVN
MGSPPSQARPGSQINITAQNNVSPLWNSANSSTYTSPMSNTSCSNPQNGGFYGSLTQDNQ
TNLNEEKDPLSMSPGNLSDQQRLIMQSQEKPFEQDGNVVTGQSPAQASVAPSPLRQEPQV
PQPSMGAPYAPHNLPQNTTQEKQEQPKNTNMMNNRYPVVKLGRLPEGLLKRHEVSGDERS
RKNSTMESDSDDNAPLKAKTSVNITPPVDKDREAIDIAREKNWEAVKRKHEEASKKEEAE
ASIVRPKLRKVERRLVPVLEMLSVDELMETNTYQRFNKLIETVFESIEDDIIVTDEMEGT
DIPEDLLLPRYQLQELCSEAAKLKNLGAMEAIPSDRLVRLLSILEKNIRAAEKMSLVGDP
EDSEEMRQICIESALERVMCASDSCLTALYIMTSPSMPKRIFLEDVIDRIIMFIKFQLNN
TIYCVYDPVYSIQTTSKKKVDGRKRRGGGAGNATRRGAGGSTRATRELYTHAHECVTLLA
ELLAAHQLTDTTVLHASTVGVSPFFVENISELQLSALKLVTTIFTKYEQHRRLLLEDILA
SIARIPSSKHNLRSFQLSSDQHIQMLTALVLQLVQCVVTLPETLCKSQDKDKNKDKQSTE
HDKKSADKDLVIISKYEAAISVGGTFLTSFLNKCRSRNEEVDFRPLFENFVHDLLTTVNK
PEWPATELLLSLLGTMLVKYMSDKSMEMSVRVASLEYLGLVAARLRRDSVTSRAKLSTMD
AVVRDIRAEEEKDGNHGQNVTEGLDEDEERTEFLQRVLLDYLAVNGQKDPAWNCARHFYI
TQWFRDMVVQPKSSSPTKKPKHKSSKKRHKDETSDEDSDDNDSDSDIKESKSSKHTSAIV
SAEKFKTIERRKTFFLEKIRPFRYQGGTQVQVMQSYIDYGGAELISQYLASKRSFSQSFD
RYLRKILVILCENTIAIRTKAMKCLALIVEADPAVLARQDMQIGVNRSFLDQSTAVREAA
VDLVGKFVLSRPELIDKYYGMLSNRILDTGVSVRKRVIKILKDICTECPEFPKIPEICVK
MIRRVNDEEGIRKLVMEVFQNMWFSPCQNSTRHGALDITAAAADPLTRKVLNITDVVISS
RDMGLEWFQQLLQSLFKPKEDKDDSTKIIYQPPKSLLLACQQIVDCLIENLLQLEENSVD
GSGSSQRILACLSTLHLFAKIRPQLLVNHALTLQPYLSLKCQNQYEQQITSTVAMTLELV
VPLMEHPSEVFLAQLEEDAVKLILQRGQLVIAACIALLASIVNNLTRNYKLIRDVFNKYH
GILLQWKSSWQRNPDMTKALHARPHFRRSLFIVGLLLRYFDFTDAKVIEGLASDIKEQLF
STLMFFVGLEDEDFVSHTLKALGSVCVRHYEFMLRPELKEFYHQLLTSDLAPIEMKADVL
RNVEMYLQEEEQRMIRQDKEWSKRSKMENLKEMGDVSSGMASTVIQLYLKEILGAFLHTS
TVVRSSAMKVVQLVLAQGLVHPVQIVPYLICMSTDLEVTVSHTADKHLQEIDKKYPGFIH
MKAQLGIKLSYQLQKIVQSGPKNDVIRGFRKKDQDELPSSLNGFLYSLLRNTRPQRRALV
LSLLKQFDDVSTAPLDQMLYLADNLSYFPYQVQDEPLFIIHHIDIIISTSGSNLLQAFRE
GLINTNVEQKDGLDEEEDEEEAEALVARLPESTRPLRDAMRQARGCLLLLVLKQHLKQLY
GFTDAKINQYSPSESVKVYEKAVSRRHAAVFEPRATIAQLRHAEPAGELDERGRRRLVDD
YLEFKQLMLKFDPEEEEDEEFTPGGAAAATGAAAAASAGEGAGAAGASGHQPPAPPAPPP
AT
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagagggatatcccaagtgtaccgattacaactttggcaggagtagccagtttg
acggatttattaccagtgttgccgcttcccacacctttaccatcaacccttaacaataaa
tctcagttgtttcacccccgggttgcagaggaagctgcaattttgcttgcaactcgtgat
gataatttagtaacactgctattgcagtcacttatgcaaacatcagtggaacatatagat
ctcaaggatgaaagcataccaaacgcagttagccctgctcctcagcaacaggcaacacca
gaactattgaaagcaattttacatgtgaacccgaatgtgtttgaccagcaacaaagaaat
cactggagcaaccatgtcacctcaaagtttaatgggatgtcaccatctgcctcatacaat
tatgcatcacacaacactgctcattcaagtccttcttcactcggaacagcagttcactct
acaggcattccaaaccaacaactgctagctccaccatgtcagtcatcaccgcatgtcaat
atgggctcgccaccatcacaagccaggcctgggagtcaaatcaacatcactgcccagaac
aatgtgtctccactttggaacagtgctaattcttccacttatacaagtcctatgtcaaac
acatcctgttcaaaccctcaaaacggcgggttttatggtagtttaacacaggataatcaa
actaatttaaatgaagaaaaagatccactttctatgtcacctggcaacttaagtgaccag
caaaggttaataatgcaatctcaagaaaaaccattcgaacaagacggtaatgtggtaacg
ggacagtcgcctgcgcaagcgagtgtggcgccctcgccgctgcgccaggaaccacaagtg
cctcagccgtcgatgggcgcgccatacgcgccgcacaacttaccacaaaacaccactcag
gagaaacaagaacaacccaagaacaccaatatgatgaacaatagataccctgttgtgaaa
ctcggaagattacctgaaggattgctgaaaaggcatgaagtttctggtgatgagagatct
aggaaaaatagtacaatggagtctgattctgatgataatgctccactcaaagcaaaaaca
tcagtaaatataactccaccagtagacaaggatagagaagcaatagacatagctagagag
aaaaattgggaagcagtgaaaaggaaacatgaggaagccagcaaaaaagaagaagctgag
gcatcaatagtacgaccaaaactgagaaaagtagaacggagattagtacctgttttagaa
atgttatcagtggatgaacttatggagacaaacacttatcaacgctttaacaagcttatt
gagactgtgtttgaaagtattgaagatgatataattgtaactgacgaaatggaaggaaca
gatatacccgaagatttattgctcccaagatatcaactgcaggaattgtgttcagaagca
gcaaagctgaagaacctaggtgctatggaagctatcccctccgatcgtctagtgaggtta
ttatcaatactggagaagaacataagggctgctgagaagatgtcactagttggtgatcct
gaggacagcgaagaaatgagacaaatatgtatagaatcagcattagagagggttatgtgc
gcttctgattcttgccttactgctttgtacataatgacgtcgccgagtatgcccaaacgt
atattcctagaagatgttattgacaggatcataatgttcataaaattccaacttaacaat
accatttactgtgtttacgatccagtctatagcattcaaacaacgtctaagaagaaagtg
gacggacggaagcggcgtggcggtggcgcggggaacgcgacgcggcgcggcgccggcggc
tcaacgcgtgcgacgcgcgagctgtacactcacgcgcacgagtgcgtcacgctgcttgct
gagcttctagctgcgcatcagttaaccgatacgactgtactgcacgcctccactgtcggt
gtgtcaccgttctttgtcgaaaacatcagtgagctgcaactttcggcattgaagctcgtt
accacgatttttacaaagtacgaacaacatcggaggctattacttgaagacatattggcg
tccatagcgcgcatacctagttccaagcacaatctgcgctcgttccagctaagctctgac
caacacatccagatgttgacagctctagtattgcaactggtgcagtgtgtcgtcactcta
ccggagacactgtgcaaatcgcaagacaaggataaaaacaaagacaagcagtctactgaa
catgataaaaaaagtgcggacaaagatctagtaataatatccaagtacgaagccgcgatc
agcgtgggaggcacgtttcttacatccttcttgaacaaatgccgcagccgcaacgaggaa
gtagactttaggccgctgttcgagaactttgttcatgatctactcaccaccgttaacaag
ccagagtggcccgctacggaattgctactcagcctactgggaaccatgctagtgaagtac
atgtcggacaagtctatggagatgtcagtgcgggtcgcatcgttggaatacctgggtttg
gtggcggcgcggctgcgacgcgatagcgtcacgtcgcgcgccaagctctccaccatggac
gccgtcgtgcgcgacatacgcgccgaagaggagaaggatggaaaccacggacagaatgtt
acggaggggcttgatgaagatgaagaaagaacagaattcttgcagcgagtgctactcgat
tatttagcggttaacggccaaaaagatccagcttggaactgcgcaaggcacttctacatt
acgcagtggttcagagatatggtcgtccagcccaagagctcgtcgcccacgaaaaaacct
aaacataagtctagcaaaaagcggcacaaagatgaaaccagcgacgaagattctgacgat
aacgacagcgacagcgacataaaagagtctaagtcgtcaaaacacacgagcgcaatcgtc
tctgctgaaaagttcaaaactatagagcggcggaaaacattttttctagaaaaaattagg
ccgttccgttaccagggcggcactcaagtgcaagtcatgcaatcgtacatagattacggc
ggagcggagttgatatcgcagtacttggcgtcgaagcgttcgttctcgcagagtttcgac
cgttacctaaggaagatactggtaatactgtgcgagaacacgatcgcgatccgtacgaaa
gcgatgaagtgtctggctctgatcgtggaggcggacccggcggtgctggcccgtcaagac
atgcagatcggtgtcaaccggtccttcctcgaccagtccaccgccgtgcgggaggccgcc
gtcgacttagtcggcaaattcgtgctcagccgacccgaactcattgacaagtattatgga
atgctctccaatagaattttagatacaggtgtatcagttaggaaacgagtgataaaaata
cttaaggatatttgtacagagtgccccgaattccccaaaataccagagatctgcgtgaag
atgataaggcgagtgaatgacgaagagggtattcggaagttggtaatggaagtattccag
aacatgtggttcagtccgtgtcagaactcaacgaggcacggagccttggacattactgct
gcggccgcggatccgctgactaggaaagtgttgaatataactgacgtggtcatatcctca
agagatatggggcttgaatggttccagcagttgttgcaaagcttgttcaaaccaaaagaa
gacaaggacgactcgactaagattatctaccaaccgcctaaatcgcttttattagcgtgt
caacaaattgttgactgccttattgaaaacttactacagttagaagaaaatagtgtggat
ggaagtgggtcatctcagcgtattctcgcgtgtctttccacgttgcatttatttgcgaaa
attaggccacagttattagttaatcatgccttaacgttacaaccgtacctgagtttaaaa
tgtcagaaccaatacgagcagcagataacgtcgacggtggcgatgacgctggagctagtg
gtgcctctgatggagcacccgagcgaggtgttcctggcgcagctggaggaggacgccgtg
aagctgatcctgcagcgcggccagctcgtcatcgccgcctgcatcgcgctgctcgcctct
attgtgaacaatctaacgcgcaactacaagctcatccgcgacgtcttcaacaagtaccac
ggtatactgttacaatggaaatcaagctggcagagaaatccggacatgacaaaagcatta
cacgcgagacctcactttcgtcggtctctcttcatagtgggtctcctgttgaggtatttc
gacttcacggacgcaaaagtgatcgaaggactggcgagtgacatcaaagaacaactgttc
tcgacgttaatgttcttcgtcggtttagaagacgaggactttgtttcccacacactcaaa
gcacttggctctgtgtgtgtgaggcattacgagttcatgttgaggccagaactgaaagag
ttctaccatcaactgctcacgtcagatctggcacctatagagatgaaagcggacgtgcta
aggaacgtagaaatgtatctacaagaggaggaacaaaggatgatcaggcaggacaaagaa
tggtcaaagcgatcaaagatggagaacctgaaggaaatgggcgatgtttcgtccggcatg
gcgtcgacggtgattcagctgtatctgaaggagatcctcggcgcgttccttcacaccagt
acggtggtccggtctagcgccatgaaggtggtgcagctcgtgctggcacaaggcttggtg
catcctgtacagattgtaccatatttaatatgtatgagtacagatttggaagtgacggta
tctcataccgccgacaaacacttacaagagatagacaaaaaatatcccgggttcatccat
atgaaggcgcaactaggaatcaagctgtcgtatcagttacagaagatagtacaaagcggc
cccaaaaacgatgttattcgaggatttaggaaaaaagaccaagacgaattgccgtcgtct
ctcaatgggttcttatattcattgctacggaacacgcggccacagaggagagcgctggtg
ttatcgctacttaaacaattcgacgatgtttccactgcgcctttggatcaaatgttgtac
ctggcagataatttaagttacttcccgtatcaagtacaagatgaaccactttttataatt
catcacatagacatcattatttcaacatctggatcaaatttactacaagcatttagagag
ggtttaataaatacgaacgtggaacaaaaagacggtttggacgaagaagaagatgaagaa
gaggcggaggccctggtggcacgattgcctgagagcacgcggccgttacgcgacgccatg
cggcaggcgcgcggctgcctgttgctgctcgtgctcaaacagcatctgaagcaactgtac
gggtttacggacgctaaaataaaccagtattcgccgtcagagagcgtgaaagtgtacgag
aaggcagtgtcgcggcggcacgcggccgtgttcgagccgcgcgccaccatcgcgcagctg
cggcacgccgagcccgccggcgagctggacgagcgcggccgccggcggctcgtcgacgac
tacctcgagttcaagcagctaatgctgaaattcgaccccgaagaggaggaggacgaggag
tttacgccgggcggagcggcggcggcgacgggcgcggcggcggcggcgagcgcgggcgag
ggcgcgggcgcggcgggcgccagcgggcaccagccgcctgcgccgcccgcgccgccgccc
gccacctag
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