Choristoneura fumiferana (eastern spruce budworm): 141428136
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Entry
141428136 CDS
T11020
Symbol
RtcB
Name
(RefSeq) rtcB RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfum03016
]
141428136 (RtcB)
Enzymes [BR:
cfum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
141428136 (RtcB)
Transfer RNA biogenesis [BR:
cfum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
141428136 (RtcB)
Prokaryotic type
tRNA splicing ligases
141428136 (RtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Emaravirus_P4
DUF6471
Motif
Other DBs
NCBI-GeneID:
141428136
NCBI-ProteinID:
XP_073944007
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All DBs
Position
5:complement(11914832..11917283)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINPYCWKIKKGFQPNMNVEGLFYVNSALEKLMLDELKNSCRPGMT
GGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDLSDPKSIVSPGGVGFD
INCGVRLLRTNLHEKDVLPLKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLTADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KYAAGKMGLERVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKTE
EHVVDGKLKTLLVHRKGSTRAFPPNHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLDKMESMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKSVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcgtcagtataacgaagaattgaaatatttagagaagattaatccatattgc
tggaaaatcaagaagggctttcaaccaaacatgaatgttgagggcctcttttatgttaac
agtgctcttgagaaactcatgttagatgaattgaagaattcatgtcgccccggtatgacc
ggcgggtttcttcccggtgtgaaacagattgcaaatgtagcggcattacccggcattgtt
ggcaaatcagtcggtttgcctgatgtacattctggctatgggtttgcaataggaaatatg
gcagcttttgacttgtctgatcctaagtcaattgtttctcctgggggtgtgggatttgat
attaactgtggtgtacgcttgctgaggacaaatttacatgaaaaggatgttctgcctctt
aaggagcaattggcccaaagtctctttgaccatatccctgttggtgttggttctaaaggg
ataattccaatgaatgcccgtgacttggaggaggctctggagatgggcatggattggtct
ctcagagagggctatgtttgggcagaggacaaggaacattgtgaagagtatggccgaatg
cttacagctgatccatcaaaagtcagtcttcgtgccaagaaaagaggcctaccccaactt
gggactcttggagctggtaatcattatgccgaaatacaagtagtagatgagatctacgat
aagtatgcagctggaaaaatgggactagaaagagttggtcaagtttgtgtgatgatacac
tctggcagtcgaggttttggccatcaggttgctactgatgcacttgtgcaaatggaaaaa
gctatgaagagagataatattgagaccaatgaccgtcagcttgcatgtgcccgaataaac
tctgttgaaggccaagattacttgaaggcaatggcagccgctgccaactttgcttgggtt
aatcgcagctctatgactttccttaccagacaggcatttgctaaacaattcaaaatggcc
cctgatgatttagacatgcatgtcatttatgatgtatctcacaatattgctaagactgag
gagcatgttgtagatggaaaactaaagacattattggttcataggaagggatcaacaaga
gcatttccgcctaatcatccactgatccctgtggactatcagctgactggacagcctgtt
ctcatagggggaaccatgggtacttgcagctatgtcctcactggtacccatcagggcatg
acagaaacatttggatcaacttgccatggagctggccgtgctctatctcgtgcgaaatct
aggagaaacatagactacaaagaagtccttgataaaatggaaagtatgggtatttccata
cgagtggcgtcaccgaaattagttatggaagaagccccggagtcttataaaaatgttaca
gatgttgtcaatacctgccatgctgctggtattagtaagaaatctgtaaaattacgacca
atcgcagtcataaagggatga
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