KEGG   Choristoneura fumiferana (eastern spruce budworm): 141428895
Entry
141428895         CDS       T11020                                 
Symbol
U3-55K
Name
(RefSeq) U3 small nuclear riboprotein factor 55K
  KO
K14793  ribosomal RNA-processing protein 9
Organism
cfum  Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:cfum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cfum03009]
    141428895 (U3-55K)
Ribosome biogenesis [BR:cfum03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    141428895 (U3-55K)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_CAF1B_HIR1 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_IP5PC_F PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_Vps41 ANAPC4_WD40 RMC1_N Beta-prop_WDR35_TULP_N KNTC1_N Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 141428895
NCBI-ProteinID: XP_073945044
LinkDB
Position
6:5361210..5362731
AA seq 450 aa
MSSSFFLKGKSRQVQKRKGDKIKKVKPKRPDPSNLENGNDSSGSDLDIKKFSDAEDSESD
HETAEQKKLRLAKKYLEEIEKEEAKRAELKEIDEDAIGKRLQRDYLEQKGKLRVEVADTY
VAPTADDARLIRAKEHRLPLTCVCVSSDGSLAFTGSKCGTIIKWGIKEKRKLGSLTYKTH
SKFINGSVSALALSTDSKYLGSSDESKDVQIWDPSTLKHIHTFRGHKDKITGLVFRRNTH
ELYSASKDRSIKIWSLDEMAYVETLFGHQSSITSIDALTRERAISAGGRDASVRIWKIVE
ESQLIFNGPVGSLDEVKLLDEEHFVSGSDNGSLCVWSVLKKKPLCTVTEAHGSENNVPRW
ITSIATLLNSDVFASGSYDSNIRLWKVSDAYRKVLLMFSVEIAGFVNSMQFTSDGTQLYA
AVGQEHKSGRWFKVGNAKNGVLVVNLKVKS
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgtcttcctcattttttttaaaaggcaaatctagacaagttcaaaaaaggaaaggtgat
aaaataaagaaagttaagccaaaaagaccagacccttctaacctagaaaatggcaacgat
tcttccggtagtgatttagatataaagaagttttctgatgcagaagattccgaaagtgat
cacgaaacggcagaacagaagaaattgcggcttgccaagaagtatctcgaggaaatagag
aaagaagaagcgaagcgcgctgagctcaaggaaattgacgaagatgctattggaaagagg
ttacagagggactacttggaacagaaaggtaaattacgagtagaagtagcagacacttat
gttgcgcctactgcagatgatgctagattgatccgcgctaaagagcaccggctgccgctg
acctgcgtgtgtgtgagcagcgacggaagcctcgcgttcacgggcagtaaatgcgggacc
ataatcaaatggggtataaaagaaaaacgaaaacttggtagtttgacttataaaacacat
tccaagttcatcaatggcagtgtatctgcattagctttatctacagattccaaatacctt
ggtagctccgacgaatcaaaggatgttcagatatgggatcctagcacacttaagcatatc
catacatttagggggcataaggataagattactggacttgtttttagaagaaatactcat
gaattgtattcagcaagcaaagacagatctataaaaatttggtcattagatgaaatggct
tatgttgagactttgtttgggcaccagtcttctataacatccattgatgctctgacaaga
gagagagccatatctgcaggtgggagggatgcatcagtcagaatatggaaaattgtagaa
gaatcacaactcatcttcaatggaccagtaggtagcttggatgaagtaaagcttttggat
gaggagcattttgtatctggcagtgacaatggctcactgtgtgtctggagtgtgctgaag
aaaaagccactgtgtactgtaacagaggcacacggctctgaaaacaatgttcctcgatgg
atcactagtatagcaaccctattaaactctgatgtttttgcatcaggctcatatgacagt
aacattaggctatggaaagtcagtgatgcctataggaaagtgttgctgatgtttagtgtt
gaaatcgctgggtttgtcaattcaatgcaattcaccagtgatggcactcagttgtatgca
gcagtgggccaagaacacaaatcgggaaggtggtttaaagtaggcaatgcaaagaatgga
gtgttagttgtcaatttaaaggttaagtcatag

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