Choristoneura fumiferana (eastern spruce budworm): 141429113
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Entry
141429113 CDS
T11020
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141429113
09123 Folding, sorting and degradation
03018 RNA degradation
141429113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141429113
03041 Spliceosome [BR:
cfum03041
]
141429113
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141429113
mRNA degradation factors
5'-3' decay
Lsm complex
141429113
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141429113
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
LSM14
Motif
Other DBs
NCBI-GeneID:
141429113
NCBI-ProteinID:
XP_073945417
LinkDB
All DBs
Position
6
Genome browser
AA seq
95 aa
AA seq
DB search
MAQSSLPNPNTLLPLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST
PEGRKITKLDQILLNGNNIAMLVPGGEMPGDGYDA
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatcttcgttgccgaatccaaacactttattaccgctcgaattagtcgacaag
tgtataggctctcggattcacattattatgaaaaatgataaagaaatggtgggaactcta
caaggattcgacgacttcgtaaacatgttactagacgatgtaacggaatacgaatctacg
ccagaaggaagaaaaataaccaaactggaccaaattctactaaatggaaataacattgca
atgttagtgcctggaggcgaaatgccgggcgatggttacgatgcttag
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integrated database retrieval system
