Choristoneura fumiferana (eastern spruce budworm): 141429129
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Entry
141429129 CDS
T11020
Symbol
Rhau
Name
(RefSeq) ATP-dependent RNA helicase Rhau isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141429129 (Rhau)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141429129 (Rhau)
03012 Translation factors [BR:
cfum03012
]
141429129 (Rhau)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141429129 (Rhau)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141429129 (Rhau)
Translation factors [BR:
cfum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
141429129 (Rhau)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
OB_NTP_bind
HA2_C
nSTAND3
ResIII
AAA_19
RsgA_GTPase
Cas3-like_C_2
AAA_22
NACHT
AAA_11
NPHP3_N
ABC_tran
NB-ARC
AAA_16
Motif
Other DBs
NCBI-GeneID:
141429129
NCBI-ProteinID:
XP_073945460
LinkDB
All DBs
Position
6:complement(14102704..14118212)
Genome browser
AA seq
1063 aa
AA seq
DB search
MSYRWNVPPEERGKAPAPKRPPGLRGKEIGLYYRDLHRNKNKNKRAFVADLGIPPAVMYQ
VKSNIEAIESLAAKENITLRRTESFIKKEKLEFTDDLDPKDFPEYALKRIKSEAIDSTEI
QEDGPSTSKQQVEPVIFKIPKTDPPETPDFIPIGPDTPELMESLSTRQLSLSGKGDYKYS
YKDILTGTFEDKLNENIANGVIIAAKTEENDNLSFALHEEYKEMVQRDGYKTMMRFREKL
PTFKKAAELLNVISNNQVVVISGETGCGKSTQVPQIILDDAICNNKGAYVHILVTQPRRI
AASSLAARVAQERAEHLGNSVGYAVRLEKTDCRARGSIMYCTTGILLADLEVNQGLVNFS
HIILDEAHERDCHMDFSMCMVKQVLKKRKDLKLILMSATIDSERLSAYFDDCPVIHIEGL
AYPVQALYLEDVLNVTNYRLPEDTPRPNRGTKRFQERMNKMKMSKKIEKDVQHRAEIAPW
LESVKKNLSRDVYMTLQDSRIEELNIDLILALLLHICKSPPGAILVFLPGMGDITKLISA
MEKSAMFPRQHFEIYPLHSKLPTLDQRRIFDRPPPHIRKIIVATNIAETSITIDDIVYVI
DCGRIKITGLNVEDNIQTLQNEFVSKANLMQRRGRAGRCQPGIAYHLLTSYRAQVIPDRH
LPELQRSNLLEPVLTIKKLRLGKALTALQLVPDAPAETTIQKAVTHLQQCGALDDEEKLT
PLGWHLARLPVHPAAGKLLLFGALFGCVDRAASVAAVWGFKDPFNIVIGKERQVEEAKRL
LAQGEPSDHVAISEAIIQWERIGPSQQNQFAYDYFLSNSTLRLLSEMKQQLCDTLTQMGF
LTSRNTHSAWENRNADNLCVFKAIVAASLYPNIANVKWIMPRRRNKPTRITIRTPDEGKV
TIHPSSVMYSKPGGEAPLCNNPGANWLVYWLKQRSTQLFLFEVTLVYTLPLMFFGELAVS
EIDDVPEDCLVSVSTVKVQCKKETAELVFKLRSLLDQVLASMVMESSSKPKGHSQFDELV
LKAVTNLISAEDERLEVMNEDSDDSDRNDDGGRTGHHNRPRFY
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaggtggaacgtacccccggaagaaaggggaaaagcaccggcaccaaaaaga
ccgccgggtttgcggggcaaagaaatagggctttactacagggaccttcatagaaacaaa
aataagaataagcgtgcttttgtcgcagacttgggaattcctcctgccgttatgtaccaa
gtaaaatcaaacattgaagcaattgagagtcttgctgcaaaggaaaatataactttaagg
agaactgaatcttttataaagaaagagaaactagaatttactgatgatttggatccaaaa
gatttcccagaatatgctctcaaaaggatcaaatctgaagctatagatagtacagaaatt
caagaagatggcccttccacatccaagcaacaagtggaacctgtaatattcaaaatccca
aaaacagatcctccagaaactcctgattttataccaataggtcctgatacaccagaacta
atggaatctctgtctacaaggcagctctccttgtcaggtaaaggagattataaatacagt
tacaaagacatactgactggtacatttgaagacaaattgaatgaaaacattgccaatggt
gtaataattgctgctaaaactgaagagaatgataatttgagctttgctctacatgaagag
tataaggaaatggtgcaaagagatggttacaagacgatgatgagattccgtgagaagcta
ccaacattcaaaaaggcagcagagctcttgaatgttatcagcaataaccaggttgttgtt
atcagtggtgagacaggatgtgggaaatctacacaggtaccacagatcattctagatgat
gctatatgcaataacaaaggtgcttatgtacatatattagttacacaaccccgacggata
gcagcttcatctttagcagcaagggtggcccaggaacgagctgaacaccttggcaattcc
gttggttatgctgttcgcttggaaaaaacagattgcagagctcgaggcagcatcatgtac
tgcactacaggcatactcctggcggatttggaagtaaatcaaggtttggtaaactttagt
cacattatattggatgaggctcatgaaagggactgccatatggacttctccatgtgcatg
gttaaacaggtccttaaaaagcgtaaagacctgaagcttattcttatgagtgccaccata
gacagcgagcgattgtcagcctactttgatgactgccctgttattcatattgagggactt
gcttaccctgtacaggctctgtatctcgaggatgtactaaatgtgacaaactataggctt
cctgaagatactcctagaccgaatagaggcaccaaacgatttcaagaaaggatgaacaaa
atgaaaatgagcaaaaaaattgaaaaagatgtgcagcacagagcagaaatagccccatgg
cttgagagtgtgaagaaaaacctaagcagagatgtctacatgactttacaagattctaga
attgaggaattaaacatagatttaattctagcactcctgttacacatatgcaaaagtccg
ccgggcgcaattctcgtatttctacctggaatgggggatataactaaacttataagtgca
atggaaaagagcgcaatgtttccgcgacaacatttcgaaatttacccattgcactcgaag
ttgcctacgttagaccagcggcggatattcgacaggcccccaccgcatatacggaaaatt
atagtcgccacgaacatagctgagacttctataacaatagacgacattgtgtatgtgata
gactgtggcagaattaaaatcacagggttgaatgtagaggataatatacagacattgcaa
aatgaatttgtgtccaaggccaatttaatgcaaagacgtggtcgtgcgggccggtgtcaa
cctggcatcgcctaccacttactaacatcttaccgcgcccaagtgatcccagatagacac
ctgcccgagttgcagagaagcaacctcttggagccggtgctgacaataaagaagctgcga
ctcggcaaggcgctgacagcgctgcagttagtaccagatgcgcccgcagagacaactata
cagaaagcagtgacgcatctgcagcaatgcggtgcccttgacgacgaagagaaattgact
cctttagggtggcatttggcccgcttgccggtgcaccccgcagctgggaagctgctcttg
tttggagccctgttcgggtgtgtcgaccgcgccgccagcgtcgctgctgtgtggggcttc
aaagacccgtttaatattgttataggcaaagaaaggcaagtagaagaggcgaagcgtctt
ctagcgcaaggcgaaccgagcgaccacgtcgctatatcagaggctatcatacagtgggag
aggattggcccctctcagcaaaaccagttcgcgtacgactacttcctgtcaaacagcacc
ctgcggttgttatcggaaatgaagcagcaactctgcgataccctgacccagatggggttt
ctgacttcgaggaatacacactcggcgtgggagaatcggaacgcagataatctgtgcgtt
tttaaagcaatcgttgctgcgtctctgtatccgaatatcgccaatgttaaatggattatg
ccacgaaggcgcaacaagcccacgaggatcactatccgaacgccagacgaaggcaaagtc
accattcatccaagcagtgtaatgtattccaagccaggcggtgaggcacctctctgcaac
aaccctggagcgaactggctggtgtactggttgaagcagagatccacccagttattcttg
ttcgaggtcacgctggtgtacaccctgcctttgatgttctttggagagcttgctgtctct
gaaattgacgatgtccccgaagactgcctcgtatcagtatcaactgtgaaagtgcagtgc
aaaaaggagacagcggagctcgtgttcaagctcaggtctttactggaccaggttctagct
tctatggttatggaatccagctcaaaacccaaaggacatagccagttcgatgagttagtt
ttaaaggctgtgacaaatctgatttccgcagaagacgaaagattggaagtcatgaacgaa
gattcagacgattccgatcgcaacgatgacggcggccgtacgggccaccacaatcgccct
aggttttactaa
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