Choristoneura fumiferana (eastern spruce budworm): 141429162
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Entry
141429162 CDS
T11020
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfum03009
]
141429162
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141429162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT
Bac_RepA_C
HEAT_EF3_GNC1
Motif
Other DBs
NCBI-GeneID:
141429162
NCBI-ProteinID:
XP_073945509
LinkDB
All DBs
Position
6:14862184..14877402
Genome browser
AA seq
2792 aa
AA seq
DB search
MKIKPVKHKTTNTFRFVPFAERINSIDIRHAALYHIEHAYTEQPEENETHFHLALRKWHG
LNLSLNFKKFKKEVFGVITVPQLVHRKDDVVEILETYLNLEDQLCLQPLLEILVSLAKDL
RDDFYPYFPRFLDVLIRLLKTKDAERLEWTLICLAFLFKVLKPYLKKDIAVVLKRIIPLL
SETQPQYINNFAAESFAFVARDIRDKKKFINLTLNYLQTNGDAITGCGHLMYEIIKGIPG
KFHSCIETYLPLLLQHLKENKDHQEILFKLLTQTFEDSLQTIQHKEFSIFWSSILKYTEE
ILKEDNDSKGLEYILRLAGQVIEHQKGKYLTNPPQFVLLLIKVICEQSSENVLEVCAQIG
ALLLLSPNVSLSQEHAGIIVKVLLPLPYPNILIKFVQNVIDYTQFDMHILPPFIKFIIQS
DFDKEAMCTLSKICLRKSQLSMNGIKLFEWVKYPIDFGQSLPLFMKHFSDVINDDIDNIF
ENPLKLMNVLFCLPHIEKIDIDGCVSALNQLISKLVKILASYNLENQNGGNKYHCVTTPL
SKCARKVLFILANAMESAIHITGCRNLKTICDIDTLLPVILPCAADPNYLTALHLLDLYL
TACDQENGLSSPVLSLIDSYLNPNVSSPFHVVRLLTTHIYKLFENTEPLNKTAQVGGNVE
KLSVFSMCYSVESTPPSIQEYRAQQNTLQKMVFNTTQYALIKDTDFQLYPLNYMLGVLFM
NFKLLWEPVIEFIASYGNSLATDEFWPTFHKALETAFANAKRDLKQFIFDDEFGSEFEIL
QELYAEYNNIPERPDVHNYRDLLLKVMTNCIQVCEARNRDVVVLFLNFIEEEYRRTDNAN
ALKIDVETRNDTAMEVDEDKPDEVNIEDNNEIIEDMKETVSGKVTFKTLINVMQVLAQFK
NPRALHKEPVFWELYIEFLKHKNAGLQKFALDCVMNYKNKAIVAYKSNLYNLVDDKKFKD
ELTLFKITEDAQSIHAEDREHVIPIILRILYGKMTSKMATDKKGGGQTRRSLIMRYVAGC
NEKELKIFIEMAFSHVKHYMTMQPREIYESIVSTLDLKSVIIPGKLHSILNLLEVVREYF
GGYLKDELLSDLLKVFIFVCSTVGGVLSHGERVHVGYSKVMKNLRTIAIGILTKMFDQFD
KYTWNADELYVLFETLIWPLLSKLHIEGIHSPTVLLKLLSTWCHNPRYYTLLVTYSEKDP
LLSPVPEILKLMLAPRTSPVVVNMILDMVEKLLTLTEDEEEKELPALVSFNNLPIENKPE
VNVEMNFGSKILVPHIPSILEVMKRRIANSAKSNTMNKRDLLILSRVTELVASPELCDDL
LNLLLPILVRKVCLNMSEDNMEHAVNTIINLLGHSSNPQHYIKTIAVLFNKISPVDVRKL
LLKLLSSIAEAATKNKDILTRISKVISEMNAFNKRWIEQPDFDRRLDAYKEIYQLVDNNE
IDLDLAILIVNNCFYFIRTEKDIGLRDSAALCLKRILPKLLLKYWSATDGQYLVRDTVLS
LISSGIRDSKNEILRSECINLLGELARECPTTDVVLSDLNHLTNKEDREVDFFDNMSHLQ
MHRRVRALMKFCKVAKKMSKCPSPRTLTNFILPLATTYICDDKYTDKNTLIDACIEVVST
CCRLLPWYHYEVILKLYLNKMRHSSEYQKQLTRLVVGVIDAFHFDFSKAKNIELPKALMA
NVDNRKPINKNKNKERDANKSLEIGFINNETIDDDKKEENDTKEENYENERDETVKDLEN
AEIIEIDLDSELKAADDEVSIEEPELKDASNVPAFERSTQVPPSLAKRIINSLSSGLLPQ
LNRAIGKLTDHEESHKVNRRRLGLERQEQDMLRVPIALALVKLLQRLPGDVLKYHLSGII
IKLCSFLKSPLKQVRITARDIVKKIMVTIGSSYIGILLEHLTLLLTRGFQVHVLVATIHT
VLDALKSDFKPGELNENLDYILDVCTNDLFGALSEEKEVDKLHYKTPEAKPSKKSYVTLM
IVSQNITEACLINLLLPFKEVLQKHQSKKVVMKVQEAFTHITSGLVTNKFIDIESLFIFL
HGIASESIPEFVLGAPKREITEKQKEKMLIVKPDCFIIPETPKRNKEVQARHVKVSAKAN
AHVLVEFSLNILYVILKREKVPRMECRAFVDPLIPLLVDALRSDHVKVTTVALKCIGTLW
TIRVSTPTLEEMVKDIVKTLFLILHKYATFEISTQNDNYHLVRNAFKAITVLIRNVKYHT
LEADQLKTLLLYAEEDCQNDEKQTSSFTLLKAILEAKLVSTELHEVMEKVSKICILSESA
RSRDEARAIFVMYLTNYSPGKRLERYIQFFVSQLNYELQHGRESSLKFLEMIIGKLLVSQ
LTKQSDYLLLSLGACMLNDPAPVCREAAALCIESLLKRLPAQERNRLFNLVVTFFQDTQP
VHFELAAQISIRFVNVEGSEFKNRLNTILSLVGGKLLLLSNDIGEGRFVKLRLEQAENKT
DEEKQREKDHSLIQILNLIDKITVQCESSLKNKKYSSEYDEIAQQCQALLAYPHSWVRLR
AAKILSQILLSVDFEELDVIVKEKVESERSFIYENTEDVLRSLVLDLCAQYTAGVSQEMA
EQVTAVLFQILKLVHSMSSFKLSHKAKDDSEDAEGGGKVNIRWILFKLRKAVNVEVAKAP
GSMNIRIAIFTMWLHLVSSLEITDINSIVDVLLPPLVRELSTGDAMAPASPVKQLATRLG
KKLRRKIGDIEYSKLLAEAQTRLNIRRAERKKVLLQEKVNNPEKAAKRKLQLKEKKKQSK
KMKIEMMQGKRPRPKKRKAEDIDLEDTLLRDE
NT seq
8379 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaacctgtaaagcataaaacaaccaatacctttcggtttgtgccttttgcc
gaaaggatcaactctatagacatccggcatgcagccttgtaccatatagagcacgcatac
acggaacaacctgaagaaaatgaaacacatttccacctcgctttaaggaaatggcatgga
ctgaacttaagtctgaactttaaaaagtttaaaaaagaagtgtttggtgttatcacagtt
ccacagttggtacatagaaaagatgatgtggtggaaatattggagacatatttgaattta
gaagatcaattgtgcctgcaaccgttgttggagattctagtgtcactggctaaagactta
cgagatgatttctacccatacttcccaaggtttctggacgtactcattagattgttgaaa
actaaggatgctgagaggcttgaatggacattgatttgtctagcctttctttttaaagtt
ctaaagccttatttgaagaaagatattgccgttgtactgaagaggattattccgctactg
agcgagactcagccgcaatatatcaataattttgctgcagaaagttttgcctttgtagcc
cgtgacataagggataagaagaaatttataaaccttacgctgaactatttgcagacaaat
ggagatgcaataactggttgtggtcatctcatgtatgaaattataaagggcatccctggg
aaattccacagctgtattgagacatacttgcccctgcttttacaacatctgaaagagaac
aaggatcatcaagaaatcctcttcaaattactcacacagacatttgaagacagcttgcag
actatacaacataaagagttctcaatcttctggagtagtattctaaagtacacagaggag
atacttaaagaagacaatgacagcaagggtttggaatatatactgagactggctggccaa
gtcattgaacaccaaaaaggaaaatatctaacaaatcctcctcagtttgtgctattatta
atcaaagtgatatgtgaacagtcatcagagaatgtacttgaagtttgtgcacaaatagga
gctctgttactgctctctccaaatgtctccctttcacaggaacatgcgggaattatagtc
aaagttctactgcctttgccatacccaaacatccttattaaatttgtgcaaaatgtcatt
gactacactcagtttgacatgcacatcctgcctccttttattaagttcataattcaatcc
gatttcgataaagaggccatgtgtactctcagcaagatttgccttaggaagtcacagtta
tctatgaatggtatcaaactttttgagtgggtgaagtatcctattgactttggacaaagc
ctgcctttattcatgaaacacttttctgatgtcataaatgatgatattgacaatatattc
gaaaacccactgaaactaatgaatgttcttttctgtcttccccacattgagaagatagat
attgatggttgtgtttcagcattgaatcaattgatatcaaaacttgttaaaatcttggcg
agttacaatctggaaaatcagaatggtggaaataagtatcactgcgtcacaacgccatta
tcgaaatgtgccagaaaagtccttttcattcttgcaaatgcgatggagagcgctattcat
ataacgggttgtagaaacttgaagacaatatgtgatatagacactttgctgcctgtgata
ctcccatgtgcagcagatcctaactatttgacggctttgcatctacttgatttgtatctg
actgcttgtgatcaagagaatggactttcgagtcccgttctatcacttattgattcttat
ttgaaccccaacgtgtcatctcctttccatgtggtgcgccttctgaccacgcatatttac
aagctgtttgagaacacagaaccattgaacaagaccgcccaagtcgggggcaatgttgag
aaattatcggtatttagtatgtgctattcagtggaatcgactcctccctccatacaagaa
tacagggctcaacagaacactttacaaaagatggtcttcaataccacccagtatgctctt
ataaaagacactgattttcaactttacccgttgaactacatgttaggggtcttgtttatg
aattttaaattgctctgggagccagtgatagaatttatagcaagctacggaaattcactt
gccactgatgaattttggcccactttccataaagcattggagacagctttcgctaatgca
aagagagatttaaaacaattcatatttgatgatgaattcggtagcgagtttgaaattctc
caggagttgtatgcagaatacaataatattcccgaaaggccagatgtacacaattataga
gacctgctattaaaagtgatgacaaactgtattcaagtgtgtgaagcaaggaatagagat
gtcgtggttttgtttctgaactttattgaagaggagtacagaagaactgataatgctaat
gcactcaaaattgatgttgaaactcgaaatgatactgcgatggaagttgatgaagataag
ccagacgaagtaaacattgaagataataatgaaatcattgaagacatgaaagaaactgtt
tcaggaaaggtaacgtttaaaactctaataaacgtaatgcaagttttagcgcaattcaag
aatcccagagcacttcacaaggagcccgttttttgggagctatacatagagtttttaaag
cacaaaaatgcagggctacaaaaattcgcattggattgtgtcatgaactacaaaaacaaa
gccattgttgcatataaaagtaacttgtacaatctagttgacgacaaaaagttcaaagat
gaactcactctattcaaaattactgaagatgcgcaaagcattcacgctgaggacagagaa
catgtgattccgattattttaagaatcctatatggaaaaatgacgtctaaaatggcgaca
gataaaaaaggcggtggtcaaacgaggagatctctaatcatgagatacgtagctggctgc
aatgagaaagaactcaaaatattcattgaaatggcattctctcacgtaaagcattacatg
acaatgcagcctagagaaatatatgaaagcattgtttctactttggacttaaagtctgtc
atcattccaggaaaactgcatagtattttaaatcttttggaagttgtgcgcgaatatttc
gggggatatctgaaagatgaactattgtcagatctgctgaaagtattcatatttgtttgt
tcaactgtaggaggtgttctttcgcatggggaaagagttcacgtcggctattctaaagtg
atgaaaaacttaagaacaattgcaatagggatactaacaaagatgtttgatcaatttgat
aagtatacttggaatgcagatgaattatatgtcttattcgagactttgatttggcctctg
ttgtctaaacttcacatagaaggcatacacagtccaactgttttgttgaagctgttgagt
acttggtgtcataatccaagatattatactttgcttgtcacgtattcagaaaaggatcct
ttgctaagcccagttcctgaaatattgaaattgatgttggcacctcgaacaagtcccgtt
gtagtgaatatgatcctagacatggtagaaaaattattaacacttaccgaagatgaagaa
gaaaaagaactaccagctttagtatcgttcaataatttaccaatagagaacaaacctgaa
gtgaatgttgaaatgaacttcggtagcaaaattttggtgccgcacattccaagcatcttg
gaagttatgaagagacgcattgcgaactcagctaagtcaaatacgatgaataagagagac
ttgttaatcctgtcgcgagtaacagaactcgtagcttcaccggaattatgtgacgacctt
ttgaatctgttattaccaatacttgtcaggaaagtgtgtctaaatatgtcagaagacaac
atggaacacgctgttaatactatcatcaacttactaggccacagcagcaatccacaacac
tacatcaagaccattgctgtcctattcaacaaaatttcgcctgttgacgttcgcaaactt
ctattaaagctgttgtcttcgatagctgaagcggcaactaagaataaagatatattaact
cgtataagtaaagtcatatcagaaatgaatgctttcaataaacgatggatagaacaacct
gactttgatagaagattggatgcgtataaagaaatctaccagttagtagataataatgaa
atcgatttagacctggcgatacttattgttaataattgcttctattttatacgaactgaa
aaggatattggattacgagacagtgcagcattatgcttgaagagaattctgccgaaactg
ctgctcaagtattggtctgccacagatggccagtacttagttcgggacactgttctgtct
ttaatatcaagtggaatccgggattctaagaatgaaatactaagaagcgagtgtataaat
ctgcttggagaactggcaagagaatgccctactactgatgttgtgctttccgatctaaat
catttaaccaataaagaagatagagaagttgatttctttgacaacatgtcccatcttcaa
atgcataggcgcgtcagagcgctcatgaaattctgtaaagttgccaagaaaatgagtaaa
tgtccgtcgcctagaacactgacaaacttcatcttgcctctagcgaccacttacatttgc
gatgataaatatacggataagaatactttgatagatgcatgcatagaagtggtatccact
tgctgtagactgttgccttggtaccattatgaggtaattttgaagctttatttgaacaaa
atgcgtcattcttcggaataccagaaacagttgacccgattagtggtcggcgttatagac
gcatttcattttgatttttcaaaggcaaaaaatattgaattgcctaaagctttgatggct
aatgttgataatagaaaaccaataaataagaacaaaaacaaagaaagggacgccaataaa
tcattggaaatcggattcattaacaacgaaactattgacgatgacaaaaaagaagaaaac
gacacaaaggaagaaaattacgaaaatgaaagagatgagactgtaaaagacttagaaaac
gcagaaataatagaaatagatttagattcggaattaaaagcggcagatgatgaagtatcc
attgaagaaccagaattaaaagatgcttcaaatgtacccgcatttgaaagatcaacacaa
gttccaccatctttggctaagcgaataatcaattctttatcatctggattactgccacaa
ttaaatcgtgctataggtaagttgacggaccatgaagagtcacacaaggtgaaccgtcgg
cgtctaggcttggagcgtcaggaacaagacatgttgcgagtgccgatagctcttgcgctg
gtgaagttgctacagcggctgccaggagacgtgctgaagtaccatttatctggcatcatc
attaaactttgctcattcttaaagtcccctctcaaacaagtgcgaattacagcgcgggac
attgtcaaaaaaataatggtgaccatcggctcttcgtacataggcatattactcgaacat
ttaactttacttttgacaagaggcttccaagttcacgtgctagtagccactattcatacc
gttttggacgctttaaaatcagacttcaaacctggagagctaaatgagaaccttgattac
attctcgatgtctgcactaatgatttgttcggagcactttctgaagaaaaagaagtagat
aaactacattacaagacaccagaagcaaagcccagcaagaagagttacgtgaccctgatg
atagtttcacaaaacataacagaggcatgccttatcaatcttctgttgcctttcaaggag
gttctgcaaaaacatcagtcaaagaaagtcgttatgaaagtccaagaagcttttactcac
ataacaagtggtctagtgacgaataaatttatagatatagaatctttgttcatattccta
catggcatagcatcagaaagcattcctgaatttgtactcggcgctcctaagcgagaaata
acggagaaacagaaagaaaagatgcttatagtgaaaccagactgttttatcattcctgag
acacctaaaagaaataaggaagttcaggcgagacacgttaaagtatcggctaaagctaat
gctcatgtcctagtagagttcagtctgaacatactatatgtgatacttaaaagagagaaa
gttccaagaatggaatgcagggcattcgtagatcctttgatacctttgttagtggatgct
ttgagaagtgaccatgtcaaagttaccacagtcgcattgaaatgtatagggacgctttgg
actataagagtgagtaccccaaccctcgaggaaatggtgaaagatatagtgaagacgtta
ttcttgatcctgcacaagtatgcaacgtttgaaattagtacacagaatgataattatcat
ttggtgcgaaatgcctttaaggcaataacagttcttatccgcaacgtcaaatatcatacc
ttagaagcggatcagttaaaaactttattactatatgcggaagaggattgccagaatgat
gaaaagcagacgagctcgtttacactattaaaagctattttagaagcgaaactggtatcg
acggaacttcacgaggtgatggaaaaagtgtcaaagatttgcatcttaagcgaatcggcg
agatcaagggacgaggcgcgagctatattcgtcatgtacctgacgaactactctccagga
aaacgtttagagcggtacatccagttcttcgtctcgcagctgaactatgaactgcagcat
ggcagggaatcctcgcttaagtttcttgaaatgatcatcgggaaactcctagtgtcgcaa
cttacgaagcaaagcgactacctccttctctcccttggcgcgtgtatgctgaacgaccca
gcgccggtttgccgcgaggccgcagcgctctgtatcgaatccttactgaagcggctgccg
gcacaagagaggaaccggctgttcaatctcgttgtcacattctttcaagatacgcagcca
gtacacttcgagctagctgcccaaataagcatacgttttgtgaacgtcgaaggcagcgaa
ttcaagaaccgactcaacaccatactatccctagtaggaggcaagttacttctactaagc
aacgacataggcgaaggaagattcgttaaactgagactagaacaggccgagaataaaact
gatgaagaaaaacagagggagaaagaccatagtcttatacagatactcaatctaatagac
aagatcacagtccaatgtgaaagtagtttgaaaaataagaagtatagttccgagtatgac
gaaatagctcagcagtgccaggctttattagcttacccacactcttgggtgagacttcga
gcggccaagatattgagccagattttattgtctgtggactttgaagaattagacgtgata
gttaaagagaaagtggagagtgaaagaagttttatttatgagaatacggaggatgtgctg
cggagtttggttctggatctctgtgcgcagtacactgctggtgtttctcaggagatggct
gaacaggtcacagcggtattatttcaaatattaaagctagtgcactcgatgtccagtttt
aagctgtctcacaaggcaaaagacgactccgaggacgcggaaggcggtggaaaagttaat
ataaggtggatcctcttcaagttgcggaaagctgtaaacgtggaagtggctaaggcgcct
ggatctatgaacattcgcatcgcaatcttcacaatgtggctccatcttgtcagttcactt
gaaattaccgacataaattccatagtggacgtcctcctgcctccgttagttcgcgaactg
tccaccggagacgcgatggcgccagcgtcgcctgtcaaacaacttgctacaagactgggc
aaaaagctgaggaggaagataggagacattgaatacagtaaactactggctgaggcacag
actaggctgaatatcagaagagctgagaggaaaaaggttttgttgcaagagaaagtcaat
aatcccgagaaagcagccaaaaggaagttacagctcaaagaaaagaagaaacagtcaaag
aaaatgaagatagaaatgatgcagggcaaaagaccgcggcccaagaagcggaaggcagaa
gacattgacttggaagatacgttgttaagagatgaataa
DBGET
integrated database retrieval system
