Choristoneura fumiferana (eastern spruce budworm): 141429251
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Entry
141429251 CDS
T11020
Symbol
dor
Name
(RefSeq) vacuolar protein sorting-associated protein 18 dor isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04140
Autophagy - animal
cfum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141429251 (dor)
04148 Efferocytosis
141429251 (dor)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141429251 (dor)
Membrane trafficking [BR:
cfum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
141429251 (dor)
Hops complex
141429251 (dor)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
DUF4562
zf-C3HC4_2
zf_RING_Vps8
zf-RING_UBOX
zf-RING_16
zf-RING_11
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
141429251
NCBI-ProteinID:
XP_073945630
LinkDB
All DBs
Position
6:complement(17977553..17998299)
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AA seq
988 aa
AA seq
DB search
MTSIIDQMEQASQVSARFQSGPEPMTSSGYINMQLEDNTPMFSKQKMKFNATDSITHLAV
ASDYLVLAMANGKLFRMDLKKPELNEELQYSKFVQPNTKLTGIFLDPLGYHLLLAFAARN
KDGNPELVYLHRRSSKLKSVTKSRNYEVTEVGWNNENTSEITTGPILLGTSQGHILETEL
EADSDKMFTANQQYWRQLPNYLPLYGGKEIDGLIFDIVDKDTSPPITGIQFHRVNNTSKF
FVFVTTPTKLYQFIGHAVTTDGKLSLQSIFHRYLTIPETGIQEIASNLKYSKLQFYFDRN
NVPKTFAWLTGPGIFYGQLDPTSQQNSNSLFTQAFLINYPPDDRDREKAPLSFVLTEFHA
LLMYSDRVKAVSLLNHELVYEDFYSEAHGKLKNIVKDFRRRTIWAVTDKTLFRYKIVREE
RDVWLIYSEKEQFDLAKEYCFNNPAYIDIINVKQAELLFAKGDYGKSAEIFADTQSSFET
VCLKFLEADQIDALKIYLNRRLEALNEDDKTLISMLVIWMTELYLSQLGLLRRTGQQDSQ
KYHQIQSDFEVFLVQPRVEKCMQHVKSVIYDLMSSHGDKQNLIKLTNLNEDYENVIAQNI
YKKSYQEALDTLQRLKKPDLFYQFAPVLMEEAPKITVNALIAQGMRLSPSKLLPAFLSCE
NDEAHVSEIMRYLEFVMLNFNVKDKAIHNYLLTLYAEHDQLALMRYLERQGQDIMLVNYD
VHYALRLCREKELSEACVNLSALLGLWEAAVSLALRVDPALARRVAAQPADPALRRTLWL
SIAEHVITQNQELKEAMSFLAECPLLKIEDLLPFFSDVVTIDHFRDPICQSLQEYNCQIK
ELKSEMDEATQAAESVRSDIKSFRNRSVKVSVSEPCCLCELALLLRPFYLFPCGHKFHSD
CLLAEAQPILGPARRNKLADLQRQLNVLSKIELSTLTSSGLPLRELLRNEIDDIVANECI
FCGEHMINCIDKPFIAEEDWDRVMKEWE
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaataatcgatcagatggagcaggcctcgcaggtctctgcaaggtttcagtcc
ggcccggagcccatgacatcctctggctacataaacatgcagctagaggacaatactcca
atgttttcgaagcagaaaatgaagttcaatgccactgactccataacccatttagctgtg
gccagtgactacctggtgcttgctatggcaaatggaaaactattccgcatggatttgaaa
aagcctgagctgaatgaagaacttcaatattcaaaatttgtccaaccaaacacaaagcta
accggcatattcctcgaccctctgggttaccacctccttctggcatttgccgcgagaaac
aaagacggcaatcccgaactagtttacttgcaccgaagaagctccaaactgaagtcagta
acaaagtccaggaactatgaagtgacagaggttggatggaataatgaaaatacgtctgag
attacgacagggcctattttgctggggacttcgcaggggcacattttggagactgaatta
gaagccgatagtgacaagatgtttacagccaaccaacagtactggcggcagctgcctaat
tatctcccactatatggaggcaaggagatcgacggtttgatcttcgacatagtggacaag
gatacgagccccccgatcacgggcatccagttccaccgcgtcaacaacaccagcaagttc
ttcgtgttcgtcacgacgcctaccaaactgtaccagttcatcgggcacgcggtcaccact
gacgggaaactctcgctgcagtccattttccatagatacctcacaataccagagaccggc
atacaagaaatagcatccaatctgaagtattccaagctgcagttttacttcgacagaaat
aatgtgcctaagacattcgcctggctgaccggccctggcatattctatggacagttggac
cccacgtctcagcaaaactcgaactctctcttcacgcaagcattcctcatcaactaccct
cccgacgacagagacagagagaaagcgcccctctctttcgtcctcacggagttccacgct
ctcctcatgtactccgaccgcgtcaaagcagtgtccctcttaaaccacgagttagtgtac
gaagacttctattccgaagctcacggtaaattaaaaaatatagtcaaggattttagaaga
cgcaccatttgggcggtcactgacaagactttgttcagatacaaaattgttagggaagaa
agggatgtttggttgatttattcggagaaggaacagttcgatctggcgaaggaatattgc
ttcaataacccagcatacatagacattataaatgtgaaacaagcggagctgcttttcgcc
aaaggcgattatggcaaaagcgccgagatattcgctgacacccagagcagttttgaaacc
gtgtgccttaaattcttagaagctgatcagatagatgctctaaaaatatacttaaacaga
cgattagaagctctaaatgaagacgataaaactcttatttccatgctagttatctggatg
acggagctatatctgtctcagctaggtcttctcagaagaacgggacagcaagactcgcaa
aaataccaccaaatccaaagcgatttcgaagtgtttctagtccagcctagagttgaaaag
tgtatgcagcacgtcaaatccgtcatttacgacctgatgtcgtcgcatggtgataaacag
aacttgatcaaactgacgaatctgaacgaagactacgagaatgtgatagctcagaatatt
tacaagaagtcctatcaagaggcattggatacgcttcagaggttaaagaaaccggacttg
ttttatcagttcgcgccggttttaatggaggaggctccgaagattaccgtgaacgccttg
attgctcaagggatgcggttgagcccttccaaactgctgccagcgtttctttcgtgtgag
aacgacgaagctcatgtgtccgaaataatgaggtatttggagtttgtgatgctgaacttc
aatgtgaaagacaaggcgattcataattacctgctgacgttgtacgcggagcacgaccag
ctagcgctgatgcggtatctggagcgacagggacaggatatcatgctggtcaactatgat
gttcattatgctttgaggttatgtcgcgagaaggaactgtcagaggcgtgcgtgaacctg
tcggcgctgctggggctgtgggaggcggcggtgtcgttagcgctccgcgtggaccccgcg
ctggcgcgccgcgtggccgcgcagcccgcggaccccgccctgcgccgcacgctgtggctc
tccatagcggagcacgtgataacccagaaccaagagctgaaggaagcgatgagcttcctg
gcggagtgtccgcttctcaagatcgaggacctgctgcctttcttcagcgacgtcgtcacc
atcgaccacttccgggaccccatctgccagtccttgcaggaatacaactgtcaaataaaa
gagttaaagtctgaaatggacgaagctacgcaggctgcagaatcggtccgttcagacatc
aagtcgttccgcaaccgcagcgtgaaggtgtccgtgtcggagccgtgctgcctgtgcgag
ctggcgctgctgctgcggcccttctacctgttcccgtgcggacacaagttccacagcgac
tgcttgctggcagaggctcagcccatacttggccccgctcgccgcaacaagttagcggac
ctccagcgacaactgaacgtactctcgaagatagaactatcaaccctcacctccagtgga
ctgcctctgcgggaactgctccgcaacgaaatagacgacatagtggccaatgaatgcatc
ttctgcggggagcacatgatcaactgtattgacaaaccgttcatagctgaggaagactgg
gacagggtcatgaaggaatgggagtag
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