Choristoneura fumiferana (eastern spruce budworm): 141429314
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Entry
141429314 CDS
T11020
Symbol
Atg18a
Name
(RefSeq) autophagy-related 18a isoform X1
KO
K17908
autophagy-related protein 18
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04136
Autophagy - other
cfum04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141429314 (Atg18a)
04136 Autophagy - other
141429314 (Atg18a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141429314 (Atg18a)
03029 Mitochondrial biogenesis [BR:
cfum03029
]
141429314 (Atg18a)
Membrane trafficking [BR:
cfum04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
141429314 (Atg18a)
Mitochondrial biogenesis [BR:
cfum03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
141429314 (Atg18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
Beta-prop_RSE1_2nd
WD40
WD40_CDC20-Fz
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
DUF7165
Motif
Other DBs
NCBI-GeneID:
141429314
NCBI-ProteinID:
XP_073945714
LinkDB
All DBs
Position
6:complement(21886054..21902489)
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AA seq
457 aa
AA seq
DB search
MSLGGQNTDGSNAGGIFVQFNQDCTSLVAGSASGYHLFALTPDEGVEEIYASNSGQDTCL
VDRLFSSSLVAIVTVAAPRKLIVCHYKKGTEICNYSYSNTILAVKLNRSRLVVCLEESLH
IHNIRDMKILHTIRDTPPNPRGLCALAPAADRCLLAYPGSSAVGEVQIFDAVHLTAACVL
SAHESGLAALAWSACGRRLATASERGTVIRVFAVPERARLFELRRGVKRCVTISCLAFSA
CGALLAAASNTETVHVFRLQDTAPAHAPAAQDKPAAGAVTAAGAGAGAGEAEGGGWLGWL
SSAVAAGAGLLPAHVADVLAQGRAFAVARLPQPAMQPQVAFTNVGRAPRLLVATHDGLLL
VFALDAAEGGGGDCALLRTHRLLEPRAPPAPHPHPHPHMPDAAAGNSYAGALRGRDPARM
TESERAGELGAALEGSPPRGPFDLRDPRHFPPMPAQD
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgggaggacagaacacagatggatcaaacgcaggaggcatattcgtccaattt
aaccaggattgcacgtcgctggtggcgggcagcgccagcggctaccacctgttcgcgctg
acgccggacgagggcgtcgaggagatctacgcgtccaactccggccaggacacctgcctc
gtcgaccgcctcttcagctccagcctcgtcgccatcgtcaccgtcgccgcgccccggaag
ctgatcgtgtgccactacaagaaggggacagagatatgtaactacagctacagcaacacc
atcctcgccgtcaagctgaaccgctcgcggctcgtggtgtgcctggaggagtctctgcac
atccacaacatccgcgacatgaagatccttcacacgatccgcgacacgccgcccaacccg
cgcgggctgtgcgcgctggcgccggcggccgaccgctgcctgctggcgtacccgggctcg
agcgccgtgggcgaggtgcagatcttcgacgccgtgcacctgacggcggcctgcgtgctg
agcgcgcacgagtcggggctggcggcgctggcctggtcggcgtgcggccgccggctggcc
acggcctcggagcgcggcacggtcatccgcgtgttcgccgtgccggagcgcgcaaggctg
ttcgagctgcggcgcggcgtcaagcgctgcgtcaccatcagctgcctggccttcagcgcg
tgcggcgcgctgctggccgccgcctccaacactgagaccgtgcacgtgttcaggctgcag
gacacggcgcccgcgcacgcgcccgcggcccaggacaagcccgcagcgggtgcagtgacg
gcggcgggcgcgggcgcgggcgcgggcgaggcggagggcggcggctggctgggctggctg
tcgtcggcggtggcggcgggcgcggggctgctgccggcgcacgtggccgacgtgctcgcg
cagggccgcgccttcgccgtcgcgcgcctgccgcagcccgccatgcagccgcaggtcgcc
ttcaccaacgtgggccgcgctccgcggctgctggtggcgacgcacgacgggctgctgctg
gtgttcgcgctggacgcggccgagggcggcggcggcgactgcgcgctgctgcgcacgcac
cgcctgctggagccgcgcgcgccgcccgccccgcacccccaccctcacccccacatgccc
gacgcggcggcgggcaacagttacgccggcgccctgcgcggccgcgaccccgcgcggatg
acagagtccgagcgcgccggagagctgggcgccgcgctggagggctccccgccgcgcggc
cccttcgacctgcgcgacccgcgacacttcccgcccatgcccgcccaggactag
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