Choristoneura fumiferana (eastern spruce budworm): 141429658
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Entry
141429658 CDS
T11020
Name
(RefSeq) ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141429658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141429658
03009 Ribosome biogenesis [BR:
cfum03009
]
141429658
03036 Chromosome and associated proteins [BR:
cfum03036
]
141429658
Enzymes [BR:
cfum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
141429658
Messenger RNA biogenesis [BR:
cfum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
141429658
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
90S particles
RNase
141429658
Prokaryotic type
rRNA processing factors
141429658
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
141429658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
141429658
NCBI-ProteinID:
XP_073946185
LinkDB
All DBs
Position
7:complement(9255163..9270699)
Genome browser
AA seq
1289 aa
AA seq
DB search
MSIPPVNYSVPPPRLDMPPPVAPPLGPLSVPPPQLFQHPPPYALPPIPPIDKPPPLPITS
LPPLNVPPPPVTAYPPPIIPPPYPPPPVKADHAFPTPDFSNPPPPKPKEQCIKKPEDTHL
YQQNLESPSGSRERGKDYYESRSHHSSSRERYSPLRHRGRSIEREREYREGSHRHHTSNR
SPSHTRSASYSRSRHSRSPSRYNHRDRDREYCKEREGYRESGDRDRAREIEKERYYRDRY
HAEKMEHERRRYEYERRHSPSHHRESRSYSRSHDPREERYRRSPSRRSCRSPGRDSHRHS
HVRDMSPRSRQGSATRKPLTDREKILEEYRKNYCQTSEDFIEKMEKWSKEHNHEEEEAPK
MWYRSSPAELYYKPAENGVGVQQTQKLERICDTFFKKVIERGRKARPEVDELPPLKPPKA
KMCKHRLDEKSSSSSSSDSEGSLDEDGLQGYTDRIMVELQRKQSHPRRLHPEMWFNNTGE
MNGGPLCRCSARARRHGMRHGVYAGEQTFPKCDPRTSNIDKLYHYRITVSPPTNFLIKAP
TIIGHDEHEFLFSGFSMFSHYKLAKLPTCKVIRFNIEYTILYVEEPAPQNFTVRELDLFE
EFLFTELLELVDLDLGKATETSCSQFHFLPRFVRFLPEGGCEVLSMCEVLKYLLNESGLL
IPPDMLEDVHGMDHYTWQKFVDRIKGMIVTYPGKKPCSVRVDQLDRSPPVNAKDVKNPKE
LKKFFPEIVHFGIRPPQLSYAGNPEYQKAWRYYVKYRHLIANMAKPSFKERQKLAAKEAK
LQEMRTQSKMKRDVTVAISSDGFHTTGLMCDIVQHAMLIPVLVRHLRFHKSLDSLENKMS
YVFKQRALLQTALTHPSYRENFGTNPDHARNSLTNCGIRQPEYGDRRIHYTRKKGIVTLI
NIMSRFGKHIETESEIKHNERLEFLGDAVVEFLSSIHLFRMFPGLAEGGLATYRASIVQN
QHLAKLAKNIELEQFMLYAHGSDLCRDVVMRHAMANCFEALMGALFLDGGIQVADRVFSL
ALWYGEDELLGVWNKERAHPLQEQEPLGDRKYIKDFKFLQKLTEFEDSIGVQFKHIRLLA
RSFTDRSVGFTHLTLGSNQRLEFLGDTVLQLVVSDRLYRHFPDHHEGHLSLLRSSLVNNR
TQAMVCDDLNMSAYAIYNNPKAKPTTKKHKADLLEAFLGALYVDKNLEYCQAFCNACLFP
RLQEFILNQDWNDPKSKLQQCCLTLRSMEGGEPDIPLYKVIECLGPTNTRVYTVGVYFRG
ARLAAARGHSIQEAEMNAAEQALEQAHGN
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtccataccgcctgtaaactacagtgttccgccaccgcgattggacatgcctccgccg
gtggcacctccgctgggaccactgtccgtgccgccgccgcagctctttcagcacccgcct
ccctacgctctgcctcctatcccgccaattgacaaacctccacctttgccgatcacaagt
ttaccacctttaaacgtgcctccaccgccggtgactgcttaccctccccctatcatacca
cctccatatccgcctcctcctgtgaaggcagatcacgcatttcccactcctgattttagt
aacccaccaccacctaagcctaaagagcaatgtataaaaaaacctgaagacactcatttg
tatcaacaaaacttagagagtccctcgggatcaagggaaaggggtaaagattattatgag
tctagaagccatcattcatcatcaagggaaagatactcaccgttacggcatagaggtaga
agtattgaaagagaaagagaatacagagaggggagtcatcgtcaccacacctctaatcga
agtccgagtcacactcgcagtgccagctatagccgaagccggcacagtagaagtccttcc
agatacaatcatcgagacagagatagagaatattgtaaagaaagagaaggctacagagag
agcggtgatagagatagagccagagaaatagaaaaagaaagatattacagagacaggtat
catgctgagaaaatggaacatgaaaggagaaggtatgaatatgagagacgacatagtcca
tctcatcacagagagtctcgaagctacagcagaagtcatgatcctagggaggagaggtac
aggaggtctcctagtagacgcagctgtcggtcacccggcagagattctcatcgccacagt
cacgtgagagacatgtctcctcgctccaggcaagggtcagcaacgagaaaaccattgaca
gatagagagaagattctagaagaatataggaagaattactgtcagacttcagaagatttt
attgagaaaatggagaaatggtctaaggaacataatcacgaagaagaagaggcaccaaaa
atgtggtacaggagttctccagcagaattatattacaaacctgcagaaaatggtgttggg
gttcaacagacacaaaagttggaaaggatatgtgatacattcttcaagaaggtgatcgag
agaggaaggaaagccaggccggaggttgatgaactaccaccgctgaaaccacctaaggct
aagatgtgtaaacatagattggacgaaaagagctcttcatcatcatcatcagacagcgaa
ggtagtttggatgaggacgggctgcaaggatacacggatagaatcatggtggagctgcaa
aggaagcagagccacccgagacgacttcatcctgaaatgtggttcaacaatacgggcgag
atgaatggcggcccgctgtgccgctgcagtgcgcgtgcgcgccggcacggcatgcggcac
ggcgtgtacgccggcgaacagaccttccccaagtgcgatccccgcaccagcaacattgac
aagctctatcattatagaataactgtatctccgccaacgaacttcctaataaaagcgccc
accatcatcggccacgacgaacacgagttcctcttctccggcttctcaatgttctctcac
tacaagctggctaagcttccgacgtgcaaagtgattaggttcaatatagaatacacgata
ttgtacgtggaggaacccgcgccgcagaattttactgtgagagagctggatctgtttgag
gagttcctgtttaccgagctgctggagctagtcgacttggatctgggcaaagcgacagag
acgtcctgttcgcagttccatttcctgccgcggttcgtgcgcttcctcccggagggtgga
tgcgaggtcctatcaatgtgtgaagtactaaagtatctgttaaatgaaagcggcttgctg
atcccgcctgacatgttggaggatgtccacgggatggaccattatacttggcagaagttt
gtggacaggatcaaaggcatgatagtaacgtaccccggcaagaagccatgctcggtgcga
gtcgaccagttggaccgcagtccgccggtcaacgcgaaagacgttaaaaatcccaaggag
ttgaaaaagttcttcccggagatcgttcatttcggcatccggccgccgcaactgagctac
gctggtaaccctgaatatcagaaagcctggcgctactacgtaaagtaccgtcatctcatc
gccaacatggccaagccgtctttcaaggagagacagaagctcgcagccaaagaggccaaa
ttgcaagagatgaggacgcagagcaaaatgaagagggacgtcacggtagccatatcatct
gatggcttccatactactggtcttatgtgcgatattgtacagcatgccatgttaatccca
gtgttggtccgacacctccgcttccacaaatcgctggacagtctcgagaacaagatgagt
tacgttttcaaacagcgcgcgctcctccagacggctctgactcatccctcgtaccgggag
aacttcgggaccaatcccgaccacgccaggaacagtctcaccaattgcgggatacggcag
ccggagtacggcgatcggaggatacactatactcggaagaagggcatcgtaactctgatc
aacataatgtctcgcttcggcaagcatatcgagactgaatcagaaatcaaacacaatgaa
cggctcgagtttctgggggacgcggttgtcgagttcctgtcgtccatacacttgttccgg
atgttcccgggactagccgagggaggcctggcgacctacagggcctctatagtgcagaat
cagcatttggctaagttggctaagaatatagagctggagcagttcatgctgtacgcgcac
gggtcggacctgtgccgcgacgtggtgatgcggcacgccatggccaactgcttcgaggcg
ctcatgggcgccctgttcctcgacggtggcatacaggtggcggaccgtgtgttctctctg
gcgctatggtacggcgaggacgagttgttgggcgtgtggaacaaggagcgcgcgcatccg
ttacaagagcaggagcctctcggggatcgcaagtacatcaaggacttcaagttcctgcag
aagctcaccgagttcgaagactctataggtgtccagttcaaacacatccgtctcctcgcg
cgctcgttcacggaccgctccgtgggcttcacgcacctcacgctcgggtccaaccagcga
ctcgagttcttgggcgacaccgtgctgcaactagtcgtctctgatagactgtatcgccat
tttcctgaccatcacgaggggcatttgtctttgctacgatcgtcgctagtaaacaatagg
acgcaagcaatggtgtgcgacgacttgaatatgtccgcatatgccatttacaataatccg
aaagctaagcccacgactaagaaacacaaggccgatctactcgaggcgttcctgggagct
ttgtatgttgataagaacctagagtactgccaggcgttctgcaacgcgtgcctgttcccg
cggctgcaggagtttattctgaaccaggactggaacgaccccaagtccaagctgcaacag
tgctgtctcactctaaggagcatggagggtggcgaacccgacataccgctatacaaagtg
atcgagtgtctcggtccgaccaacacgcgcgtgtacacggtgggcgtgtacttccgaggc
gcgcgtctggcggcggcgcgcggacactccatccaggaggctgagatgaacgccgccgaa
caggcgctggaacaggcccacggtaactga
DBGET
integrated database retrieval system
